Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., RND transporter from Azospirillum brasilense Sp245

 Score =  236 bits (603), Expect = 6e-67
 Identities = 134/364 (36%), Positives = 211/364 (57%), Gaps = 5/364 (1%)

Query: 8   MLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPN 67
           M +I  +LFG +  FN F+ + IA++ A    P  PV+V  A          AIG +  +
Sbjct: 33  MAVILGVLFGGLYAFNNFRNKAIADFFAGNKPPPTPVSVAEATAQSVPKYTTAIGTLTAS 92

Query: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127
           + VT+  E  G + QI FESG +V   +PLV L+ A E+A+L +  A+   A+   +R +
Sbjct: 93  RQVTVAPEVVGRVTQIFFESGARVKAGEPLVQLNDATEQADLLAFRAQAKLAENNLQRAR 152

Query: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187
            L    +  + + D+ +A     +A+I+  +A IA++ I+APF G +GIR V +G+Y+  
Sbjct: 153 NLLRNQAGPQVTVDQNQAQLDEANANIKKTEALIAQKLIRAPFDGELGIRQVNVGEYVSA 212

Query: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
           G  +V L D S + + FT+P++ +S+I + Q V I  DA P  +F   IS IEP VS  +
Sbjct: 213 GGPVVTLTDLSNLFVDFTLPEQALSQIRIRQPVLISADAAPGATFDAVISTIEPQVSPDT 272

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGE 307
             I+V+A + N + KL  GMFA   ++ P   N++ +P+TA+ YT+YGD+V++V+ +   
Sbjct: 273 RAIKVRATLQNPERKLLPGMFANIRVVQPPAANRIVIPETAVDYTVYGDSVFVVAAQKDG 332

Query: 308 KRVQQHV-----VKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPP 362
           +    HV     VK G+R +    IL+GVKPGD VV++GQ++L+NGA V   E+ A  PP
Sbjct: 333 EGKDGHVANRVPVKTGDRFDGKVEILDGVKPGDRVVSSGQLKLNNGAAVVPTEASALVPP 392

Query: 363 AETP 366
              P
Sbjct: 393 QTVP 396