Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  117 bits (293), Expect = 6e-31
 Identities = 87/341 (25%), Positives = 167/341 (48%), Gaps = 25/341 (7%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS 102
           PV V  A   D+    +A+G +     + + +  AG + ++ F+ G  V     L  +D 
Sbjct: 68  PVRVAPATEGDFPIYYKALGTVTAMNTINVRSRVAGELVKLYFQEGQMVKAGDLLAEIDP 127

Query: 103 -----AVERAN--LKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIE 155
                A+++A   L + +A L  A+   +RY+GLFA+ SI+K++ D AE+        I+
Sbjct: 128 RSYQVALQQAEGTLATNQALLKNAQLDVQRYRGLFAEDSIAKQTLDTAESLVNQYKGTIK 187

Query: 156 SLKATIARRE-------IKAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVMRLRFTV 206
           + +A +A  +       I+AP AG +G++ + +G  +     T +  +  T  + + FT+
Sbjct: 188 TNQAAVADAKLNLDFSRIRAPIAGRVGLKQLDVGNLVAANDTTALAVITQTQPISVAFTL 247

Query: 207 PQRDISRISLDQEVD--IFVDAYPQTSFK----GSISAIEPAVSVQSGLIQVQADIPNSD 260
           P++D+S++         + V+A+ +   K    G +++++  + V +G ++ +A   NSD
Sbjct: 248 PEKDLSKVISRYRTGDKLPVEAWDRGDTKMQATGVLASLDNQIDVATGTLKFKARFDNSD 307

Query: 261 GKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGER 320
             L    F    +    L+    +P  A+ +   G  VY++   +G+K+V+  ++K G  
Sbjct: 308 EVLFPNQFVNIRLRADTLKKVTLVPTAAVQFGTDGTFVYVL---DGDKKVKLKLLKTGPS 364

Query: 321 SESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTP 361
            E+   I EG+  G+ VV  G  RL +GA+V +V      P
Sbjct: 365 DETSTVITEGLAAGERVVLEGTDRLRDGAEVEVVNDSKEVP 405