Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

 Score =  103 bits (257), Expect = 9e-27
 Identities = 86/382 (22%), Positives = 162/382 (42%), Gaps = 65/382 (17%)

Query: 36  NRPEPEFPVTVVTANPVDWVPVIEA---IGFIEPNQGVTLTTETAGVIDQITFESGTQVA 92
           NR +   P+T V A  V+  P+ EA    G  EP Q V+L  +  G +  ++ + G  V 
Sbjct: 36  NREQQRSPITAVDAAVVERQPLQEATRYTGTTEPFQSVSLRAQVEGQVLGLSVDVGDPVQ 95

Query: 93  KDQPLVLLDS--------------AVERANLKSTEARLPAAKAKYE-------------- 124
             Q L  LD               A  ++ + S  A + AA A  E              
Sbjct: 96  SGQLLARLDDRLQSTAVVAAAAEVAARQSEVASQRAEVIAAMASVEQARLQLQQARSDAA 155

Query: 125 RYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARR-------------------- 164
           R   LF  G+IS +  + A+ +       + + +  +  R                    
Sbjct: 156 RLTRLFQAGAISAQEAETAQTAVLTAEQAVRTAQQQVQTRQQAVAAAERRVVAQQAIANQ 215

Query: 165 --------EIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISL 216
                   ++ AP  G++  R+   G   + G +I+ + D S +++   V + +++ + +
Sbjct: 216 EQARRNFTQLIAPVTGLVLERSTEAGNLAREGDEILTIGDFSRIKVVLRVSELELANLRV 275

Query: 217 DQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILP 276
            Q V + +DA+P+ +F G IS I P    ++ LI V+  +PN DG++ SG+ AR  ++  
Sbjct: 276 GQSVQVRLDAFPKQTFTGQISRIAPVADRRTRLIPVEITMPNPDGRIGSGLLARV-VLSS 334

Query: 277 KLENQVTLPQTAIT-----YTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGV 331
              + + +P+ A++      T     V++V ++      +   V++G R++    I  G+
Sbjct: 335 SAPDPIVVPEAALSTGETPTTSDRGTVFVVKKQGDRTTTEARSVRLGPRADGRVVIQSGL 394

Query: 332 KPGDVVVTTGQVRLSNGAKVRI 353
           + G+ +V      L  G +VR+
Sbjct: 395 QAGETIVVRSASPLKAGQQVRL 416