Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  103 bits (257), Expect = 7e-27
 Identities = 78/315 (24%), Positives = 151/315 (47%), Gaps = 11/315 (3%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLT-TETAGVIDQITFESGTQVAKDQPLVLLD 101
           PV++VT    D   ++ A G +EP     +T T    +++Q   E G +V K   L  LD
Sbjct: 30  PVSIVTPKRGDAAEIVYASGVVEPRVWAKVTSTVRERIVEQCNCE-GERVEKGAVLARLD 88

Query: 102 SAVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATI 161
               RA L   +ARL  A+ +Y R   L  + +IS+++ D A      L A I   +A +
Sbjct: 89  DTEARAILSELQARLSLAQEEYRRKLALAERNTISEQTVDRARTDVAQLEALIAGQEARL 148

Query: 162 ARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVD 221
           A   ++AP  G +  ++  +G+  +PGT +  + +   + +   V + DI R+ + Q   
Sbjct: 149 AAYVLRAPSDGRVLRQDGEIGEVAEPGTVLFWVGEPRPLIVEAEVNEEDIPRVEVGQNAY 208

Query: 222 IFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQ 281
           +  DA+P+ + +  + +I P     +   +V+  +P  D  LR GM    N+++    N 
Sbjct: 209 LRSDAFPERALEAVVDSITPKGDPVTKTYRVRLRLP-EDTPLRIGMSTDVNVVVRLSRNA 267

Query: 282 VTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTG 341
           + +P  A++    G  V +V  E G  ++++  ++ G R      +L G++    +++  
Sbjct: 268 LVIPAAAVS----GTRVAVV--EGGTAKLRE--IETGIRGTDGVEVLSGLEETARIISPL 319

Query: 342 QVRLSNGAKVRIVES 356
               ++G +V +V++
Sbjct: 320 SPDFADGTRVDVVQT 334