Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  416 bits (1069), Expect = e-121
 Identities = 209/372 (56%), Positives = 281/372 (75%), Gaps = 4/372 (1%)

Query: 1   MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEA 60
           MKKW   ML IA++  GSVIGFNLF + KIAE +AN PE EFPVT +  +P  W P I+A
Sbjct: 1   MKKWILVMLTIALVTLGSVIGFNLFVKGKIAEAIANMPEAEFPVTALAVSPTKWQPTIDA 60

Query: 61  IGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAK 120
           IGF+EP+QGVT+  E AGV+  I FE+G+ ++KDQ LV LD+ VE+ANL++   +LPA++
Sbjct: 61  IGFVEPHQGVTIANEAAGVVTNIAFENGSNISKDQLLVALDTRVEKANLQAKLVQLPASE 120

Query: 121 AKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVF 180
           A ++R   L+A+ S+SK+  D AEA Y AL ADIESL+ATI RREI+APF+G++GIRN+ 
Sbjct: 121 ADFKRLTRLYAQKSVSKQDLDNAEAKYLALKADIESLEATIGRREIRAPFSGLVGIRNIN 180

Query: 181 LGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIE 240
           LG+YLQ G+DIVRLED S M++RFT+PQ  + R+++ Q++ ++VDAYP+ +F+G I+AIE
Sbjct: 181 LGEYLQVGSDIVRLEDISTMKIRFTIPQTQLPRVAVGQKIHVYVDAYPEEAFEGEIAAIE 240

Query: 241 PAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYI 300
           PAV  QSGLIQ+QA IPN   +LRSGMFAR +++L KLE Q+ LPQTAI +TLYG++VY+
Sbjct: 241 PAVFYQSGLIQIQARIPNDHARLRSGMFARVSVLLDKLEQQIVLPQTAINFTLYGNSVYL 300

Query: 301 VS--EENGEK--RVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVES 356
           V   +ENG+   RV+Q  V V ERS + A +   +KPGD+VVT+GQ+RLSN +KV +VE 
Sbjct: 301 VEKHDENGQAVLRVRQINVNVLERSGNDALVTGPLKPGDLVVTSGQIRLSNNSKVSVVED 360

Query: 357 DATTPPAETPML 368
            A T  A  P L
Sbjct: 361 KAMTDAANMPKL 372