Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., HlyD family-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  142 bits (358), Expect = 1e-38
 Identities = 89/315 (28%), Positives = 160/315 (50%), Gaps = 6/315 (1%)

Query: 37  RPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQP 96
           RP P   VT V    V     +EA+G    N+ VT+T +   V  ++ F  G  V   Q 
Sbjct: 33  RPVPNVVVTKVATQEVR--DEVEALGTTHANESVTITAKVTDVATKVNFSDGDIVRAGQL 90

Query: 97  LVLLDSAVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIES 156
           LV L  A +RA ++  + ++   + +++R + L    ++++   D  +       A++E 
Sbjct: 91  LVQLQDAEQRARVQVAKVKVIDNQREFDRIRSLVTSQTVAELERDRLQTLIDTSRAELEQ 150

Query: 157 LKATIARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISL 216
            ++ +  R I APFAG +G+R V  G  + PGT +  L+D S ++L F VP+R + ++  
Sbjct: 151 AESALRDRAITAPFAGRLGLRQVSPGALVTPGTAVTTLDDISTIKLDFAVPERFLPQLHP 210

Query: 217 DQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILP 276
            + V+    AY    F G +++I+  V+  +  + V+A+IPN D KL  GM  +  +I  
Sbjct: 211 GKAVEAQAVAYEGQLFTGKVTSIDSRVNPSTRAVTVRAEIPNPDAKLLPGMLMKIRLIKT 270

Query: 277 KLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDV 336
             E  + +P++AI        VY+V  +N   +V +  V +G R    A I++G+  G+ 
Sbjct: 271 SRE-AIMVPESAIIPLQNRHYVYMVGADN---KVDRREVTIGLRKRGWAEIVDGLALGET 326

Query: 337 VVTTGQVRLSNGAKV 351
           ++  G +++  G +V
Sbjct: 327 IMIRGILKVRPGDQV 341