Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  250 bits (638), Expect = 5e-71
 Identities = 134/361 (37%), Positives = 214/361 (59%), Gaps = 2/361 (0%)

Query: 2   KKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAI 61
           KK    ML+ +++LFG VIGF +F+   IA+Y AN+PEP   VTV  A   DW   I A+
Sbjct: 3   KKRLAIMLVGSVVLFGGVIGFTVFRDHMIAQYFANQPEPVITVTVEDARAEDWQDTIPAV 62

Query: 62  GFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKA 121
           G +    GVT+    AG+++ I+FESG +V K   LV LD   ER  L +  A+   ++ 
Sbjct: 63  GTLRAINGVTVGAAVAGIVETISFESGQRVKKGDLLVRLDDGEERGELDAVRAQAELSRI 122

Query: 122 KYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFL 181
              R + L    + ++ + D+AEA      A I  L+A +A++ + APF GV+G+R V L
Sbjct: 123 TAGRARRLVQSAAGTRANLDDAEAQLRVNLATIGQLEARVAKKTVTAPFDGVLGVRAVDL 182

Query: 182 GQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEP 241
           G+Y+  G  +V L+D SV+   F+V Q+D+ R+++  ++ +  DA+P  +F+G+I AI P
Sbjct: 183 GEYVTAGQTLVDLQDLSVILADFSVSQKDLGRVAVGAKLTLTTDAWPGRAFEGTIKAIAP 242

Query: 242 AVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIV 301
            V   +G+  V+    N DG LR GMFA+  ++  + ++ VT+P TA+TY+L+GD +Y++
Sbjct: 243 KVDANTGMAVVEGRFDNPDGALRPGMFAKLAVLRAERQSVVTVPATAVTYSLHGDALYVL 302

Query: 302 SE--ENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDAT 359
            E  E+G+ RV +  V  G R      +  G+  G  VVT+GQV+L++G+ V + ++   
Sbjct: 303 KEAGEDGKVRVDRITVTTGVRRGDRVVVTAGLSAGQRVVTSGQVKLNDGSAVAVAQAPLN 362

Query: 360 T 360
           T
Sbjct: 363 T 363