Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  139 bits (351), Expect = 9e-38
 Identities = 86/314 (27%), Positives = 159/314 (50%), Gaps = 5/314 (1%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS 102
           PV V           +EA+G    +Q + +    +G I ++ F  G +V K   LV LD 
Sbjct: 44  PVEVAAVRRARVADRVEAVGTTRAHQAIAVVPLASGRIVEMPFPPGRKVNKGDVLVRLDD 103

Query: 103 AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIA 162
           A +RA+++  EA L       ER + L    ++++ + D+ +++  A +A ++     +A
Sbjct: 104 AAQRADVEEAEATLTQVSRALERARSLRRTQAVAQATVDDLQSNRAAAAARLDRAHKDLA 163

Query: 163 RREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDI 222
            R I APFAG++G R + +G  +  G  +  L+D S + + F VP+    R+     ++ 
Sbjct: 164 DRVIAAPFAGIVGFRELDVGARVSEGERLTTLDDLSSVDVEFAVPEIHFGRLRPGMAIEA 223

Query: 223 FVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQV 282
              A+P   F G+I  I+  +   S   +V+A +PN  G L SG+F   +I++ +    +
Sbjct: 224 TSQAFPGRIFTGAIDRIDSRIGEVSRAFRVRATLPNPQGLLPSGLFLNVSIVIEE-RPAL 282

Query: 283 TLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQ 342
            +P+ AI     G  VY++  + G   V++  + +G+R+ +   + +G+  GD VV+ G 
Sbjct: 283 MVPEEAIQAEAGGSVVYVI--QGG--AVRRQPIVLGQRTGTAVEVRDGLAEGDQVVSRGI 338

Query: 343 VRLSNGAKVRIVES 356
            RL +G+ V ++ S
Sbjct: 339 QRLRDGSPVTVIGS 352