Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  135 bits (339), Expect = 2e-36
 Identities = 87/349 (24%), Positives = 170/349 (48%), Gaps = 6/349 (1%)

Query: 9   LLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQ 68
           ++I++LL      +   +Q +  +    RP P   V      P+     +EA+G  + N+
Sbjct: 5   IIISMLLAAGAATYYFTQQTETPKGPRGRPTPNVVVAKAEMQPIR--DEVEALGTGKANE 62

Query: 69  GVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYKG 128
            +T+T +   ++ +I F  G  V K Q LV L    + A +     ++   + +  R   
Sbjct: 63  SITVTPKVTDMVTEINFNDGQMVDKGQLLVRLQDREQIARVTVARVKMKDHERELARISS 122

Query: 129 LFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQPG 188
           L    +++    D  +       A+++  ++++  R I APF+G +G+R V  G  + PG
Sbjct: 123 LVTSQTVAALERDRLQTLIDTAKAELDQAESSLKDRRILAPFSGRLGLRQVSQGSLVTPG 182

Query: 189 TDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQSG 248
           T I  L+D S ++L F+VP+R +  +++ + V+    A+    F G + +++  ++  + 
Sbjct: 183 TVITTLDDISTIKLDFSVPERFLQSLAIGKSVEASAVAFEGELFTGKVVSVDSRINPTTR 242

Query: 249 LIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEK 308
            + V+A+IPN   +L  GM  +  +I    E  + +P+ AI        VY+V++EN  +
Sbjct: 243 AVTVRAEIPNKGMRLLPGMLMKVKLIKQSRE-ALIIPEAAIIPIQKDHFVYLVNDENVVE 301

Query: 309 RVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESD 357
           R Q   V++G R      I+ GV  G+ V+  G +++  G  V++  S+
Sbjct: 302 RRQ---VQLGLRKRGWVEIVGGVDVGEQVMVRGILKVRPGDTVKVQYSE 347