Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  112 bits (280), Expect = 2e-29
 Identities = 72/312 (23%), Positives = 143/312 (45%), Gaps = 4/312 (1%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS 102
           PV   T    D          +E  Q   + +  AG+I+ I  E G +V+K Q L ++D+
Sbjct: 37  PVETTTVIQGDVSSFYSTTATLEAPQEADVVSRIAGLIESIKVEEGDRVSKGQLLAVIDA 96

Query: 103 AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIA 162
             +R +L  ++A +   + +  R K +  K  IS +S  + E +  A  A  +     + 
Sbjct: 97  KRQRYDLARSQAEVEIIEQELNRLKKMSNKEFISADSMAKLEYNLQAAIAKRDLAALQVQ 156

Query: 163 RREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDI 222
              +++P  GV+  R V  G   +    +  + +   +     +P+  +  + L QE ++
Sbjct: 157 ESMVRSPIDGVVAKRYVKAGNMAKEFEQLFYVVNQDELYGIVHLPEAQLQSLRLGQEAEL 216

Query: 223 FVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQV 282
           + + + + +    +  I P V  QSG  +V   +PN + +L++GMF R  +      N +
Sbjct: 217 YANKHTKDTIHAKVLRISPIVDPQSGTFKVTLSVPNQNAQLKAGMFTRVELRYDTHSNVI 276

Query: 283 TLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQ 342
           T+P  A+   +  DN Y +    G+  +++ V  +G R      ++ G++PG+ +V  GQ
Sbjct: 277 TVPYNAV---VNQDNQYALYVVQGDNALRREVA-LGYREADTVEVVSGLEPGEQIVIRGQ 332

Query: 343 VRLSNGAKVRIV 354
             L + + V ++
Sbjct: 333 QNLKDQSLVEVI 344