Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  136 bits (342), Expect = 1e-36
 Identities = 88/299 (29%), Positives = 152/299 (50%), Gaps = 4/299 (1%)

Query: 58  IEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLP 117
           +  +G +  N+ V +  E +G +  I       V++ Q LV L+ A  +ANL   +A L 
Sbjct: 80  LSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQGQVLVHLEDAKAKANLAEAKAYLN 139

Query: 118 AAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIR 177
             + K   YK L  + +I++   D   AS     A +++ +A +    +KAPF GVIG+ 
Sbjct: 140 DERRKLGEYKRLIKQHAITQTEIDAQLASVDIAEARLQAAQADLDYHTLKAPFDGVIGLV 199

Query: 178 NVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSIS 237
           +  LG+ +  G+++V L+D S MRL   +P+R +S+I L   V     A+P   F G + 
Sbjct: 200 DFSLGKLVSVGSELVSLDDLSSMRLDLQIPERYLSQIYLGMPVVASSSAWPGEQFHGQVV 259

Query: 238 AIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDN 297
           A+ P ++ ++  ++V+ +  N   +LR GM   A +    +  Q  +P  A+ Y+     
Sbjct: 260 AMAPRINSETLNLKVRVNFDNPSLQLRPGMLISARLDFAPV-TQAVVPVQALEYSGTKRF 318

Query: 298 VYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVES 356
           VY++  +N  +R Q   V +G R +    I +G+  GD +V  G V + +G KV  VE+
Sbjct: 319 VYVIDSDNIARRTQ---VTLGARIDDQVLIDDGLSLGDRIVVKGLVNMRDGIKVEDVET 374