Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., HlyD family secretion domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  406 bits (1044), Expect = e-118
 Identities = 209/372 (56%), Positives = 275/372 (73%), Gaps = 4/372 (1%)

Query: 1   MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEA 60
           MKKWT  ML IA+L FGSVIGFNL  + KIA+ +AN PE EFPVT +      W P I+A
Sbjct: 1   MKKWTLSMLAIAVLAFGSVIGFNLMVKSKIADAIANMPEAEFPVTAMALEMQKWQPTIDA 60

Query: 61  IGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAK 120
           IGF+EP+QGVT++ E AG +  I FE+G++V K Q L  LD+ VERANLKS   +LPAA+
Sbjct: 61  IGFVEPHQGVTISNELAGRVTSINFENGSRVEKGQLLAELDAKVERANLKSKMVQLPAAE 120

Query: 121 AKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVF 180
           A ++R   L+A+ S+SK+  D +E+ Y AL ADIESLKATI RREI APF+G++GIRN+ 
Sbjct: 121 ADFKRLSKLYAQKSVSKQDLDNSESKYLALQADIESLKATIERREISAPFSGLVGIRNIN 180

Query: 181 LGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIE 240
           LG+YLQPGTDIVRLED S M++RFT+PQ  + RI++ Q++ +FVD+YP+  F+G I+AIE
Sbjct: 181 LGEYLQPGTDIVRLEDISTMKIRFTIPQTQLPRIAVGQKIHVFVDSYPEQPFEGEIAAIE 240

Query: 241 PAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYI 300
           PAV  QSGLIQVQA IPN + KLRSGMFAR +I+LP+L +Q  LPQTAI +TLYG+++Y+
Sbjct: 241 PAVFYQSGLIQVQARIPNDNAKLRSGMFARVSILLPELNDQFVLPQTAINFTLYGNSIYL 300

Query: 301 VS--EENGEK--RVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVES 356
           +   EENG+K  RV+Q  + V ER+ + A +   +K GD +VT+GQ+RLSN +KV +VE 
Sbjct: 301 IKDVEENGKKLARVEQINLTVLERNGNNALVSGALKAGDRIVTSGQIRLSNNSKVTVVED 360

Query: 357 DATTPPAETPML 368
            A       P L
Sbjct: 361 QALIHSDTMPKL 372