Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  136 bits (342), Expect = 1e-36
 Identities = 88/319 (27%), Positives = 153/319 (47%), Gaps = 5/319 (1%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS 102
           PVTV       +  V++ +G I       L+   +  I  I F +G +V K Q +   D+
Sbjct: 59  PVTVEAVKEASFADVVKEVGKINAIDSAILSFNASEKISAIHFSNGDKVTKGQVIAEQDN 118

Query: 103 AVERANLKSTEARLPAAKAKYERYKGLFAKG--SISKESYDEAEASYYALSADIESLKAT 160
              +A+L   ++ L  AK K ER + L  K   +++K+  DE   +     AD    +AT
Sbjct: 119 TKAKADLDKAKSTLALAKTKLERIEDLLIKEPFALAKQDVDELRENVNLADADFRQKQAT 178

Query: 161 IARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEV 220
           +    IKAPF G +   +  +G  +  GT +V L   + + +R+ + Q D  +    Q V
Sbjct: 179 MNDYLIKAPFDGQLTSFSQSIGSQIAAGTALVTLYSLNPVEVRYAISQHDFGKAQKGQGV 238

Query: 221 DIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLEN 280
           ++ V+AY    FKG+++ + PAV   SG ++V A + NS+ KL  GMFA       +   
Sbjct: 239 NVTVEAYANKVFKGTVNYVAPAVDESSGRVEVHAALDNSEFKLAPGMFANIKQFYSQGVA 298

Query: 281 QVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTT 340
            + +PQ +I        V++V    G   V+Q +      ++    + EG+  GD+VV T
Sbjct: 299 CLLVPQNSIIANNDERFVWLV---RGNNAVKQIIKLAQNTNDGYTVVTEGLAKGDLVVKT 355

Query: 341 GQVRLSNGAKVRIVESDAT 359
           G   L + +++ +++  +T
Sbjct: 356 GMQNLKSDSQINVIDDKST 374