Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  135 bits (340), Expect = 2e-36
 Identities = 100/351 (28%), Positives = 168/351 (47%), Gaps = 6/351 (1%)

Query: 10  LIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDW--VPVIEAIGFIEPN 67
           +IAI L  +V     F     A    + P+P   V VVT   V+      +  IG +  +
Sbjct: 5   IIAIALIATVATAVSFSDVLQAAKPESAPQPMRTVPVVTGEVVEHPLAQSVSLIGKLAAD 64

Query: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127
           + V +  +  G I QI   S   V K Q L+ LD    +A +    A L     K + ++
Sbjct: 65  RAVVIAPQVTGKIKQIAVVSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKLKEFE 124

Query: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187
            L ++ +I++   D  +AS     A + S +A +    + APFAG  G+ N   G+ +  
Sbjct: 125 KLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGQTGLINFSEGKMVST 184

Query: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
           G +++ L+D S MRL   VP+  +S+IS+   V     A+P  +F G + AI+P V+ ++
Sbjct: 185 GNELMTLDDLSSMRLDLQVPEHFLSQISIGMPVSSTSRAWPGETFIGKVVAIDPRVNEET 244

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGE 307
             ++++    N+D +L+ GM   + I  P +   + +P  A+ Y+     VY+V E++  
Sbjct: 245 LNLKIRVQFENTDNRLKPGMMMSSTITFPPISAPI-VPVQALEYSGTKRYVYVVGEDHIA 303

Query: 308 KRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDA 358
            R +   V +G R      I  G+K GD VV  G V + +G K+  V  +A
Sbjct: 304 HRTE---VILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKINEVALEA 351