Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  127 bits (319), Expect = 5e-34
 Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 4/291 (1%)

Query: 64  IEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKY 123
           +E  Q   + +  AG+I+ I  E G +V K Q L ++D+  ++ +L  +EA +   + + 
Sbjct: 58  LEAPQEANVVSRIAGLIEVINVEEGDRVKKGQSLAIIDAKRQQYDLDRSEAEVKIIEQEL 117

Query: 124 ERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQ 183
            R K +  K  IS +S  + E +  A  A  +  +  +    + +P  G+I  R V  G 
Sbjct: 118 NRLKKMNNKEFISADSMAKLEYNLQAAIARRDLAELQVKESHVVSPIDGIIAKRYVKAGN 177

Query: 184 YLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAV 243
             +   D+  + +   +     +P++ ++ + L QE  +F +   + +    +  I P V
Sbjct: 178 MAKEFGDLFYIVNQDELHGIVHLPEQQLTSLRLGQEAQVFSNQQSKNAINAKVLRISPVV 237

Query: 244 SVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSE 303
             QSG  +V   +PN D +L++GMF R  +     EN +T+P +A+        +Y+++ 
Sbjct: 238 DPQSGTFKVTLAVPNQDARLKAGMFTRVELKYDTHENVITVPYSALINQDNKQALYVIAG 297

Query: 304 ENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIV 354
            N  +R     V++G R      I+ G+KPG+VVVT GQ  L + + V ++
Sbjct: 298 TNANRR----EVEIGYREGDAVEIVSGIKPGEVVVTRGQQNLKDQSLVEVI 344