Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug transporter subunit MdtA from Klebsiella michiganensis M5al

 Score =  106 bits (265), Expect = 1e-27
 Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 25/344 (7%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS 102
           PV   TA        +  +G +     VT+ +   G +  I F  G QV     L  +D 
Sbjct: 58  PVQAATAASEAVPRYLSGLGTVTAANTVTVRSRVDGQLLAIHFTEGQQVKAGDLLAEIDP 117

Query: 103 AVERANLKSTE-------ARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIE 155
           +  +  L   E       A L  A+    RY+ L     +S++  D  ++        I+
Sbjct: 118 SQFKVALAQAEGQLAKDRATLANARRDLARYQQLVKTNLVSRQELDTQQSLVSETQGTIK 177

Query: 156 SLKATIARREIK-------APFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVMRLRFTV 206
           + +A +A  +++       AP  G +G++ V +G  +  G  T IV L  T  + + FT+
Sbjct: 178 ADEAAVASAQLQLNWSRITAPIDGRVGLKQVDIGNQISSGDTTGIVVLTQTHPIDVVFTL 237

Query: 207 PQRDISRISLDQEVD--IFVDAYPQTS----FKGSISAIEPAVSVQSGLIQVQADIPNSD 260
           P+  I+ +   Q+    + V+A+ +T+     +GS+ +++  +   +G I+++A   N D
Sbjct: 238 PENQIATVVQAQKAGKKLVVEAWDRTNKQKISEGSLLSLDNQIDATTGTIKLKARFTNLD 297

Query: 261 GKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGER 320
             L    F  A +++   +N V +P  A+     G  V+++++EN   +V +H V  G +
Sbjct: 298 DALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNDEN---KVSKHTVTPGIQ 354

Query: 321 SESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPAE 364
                 I  G+  GD VVT G  RL+ GAKV +VE+      AE
Sbjct: 355 DSLKVVINAGLSAGDRVVTDGIDRLTEGAKVEVVEAQNAASAAE 398