Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., cation efflux system protein (outer membrane protein) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 83/322 (25%), Positives = 141/322 (43%), Gaps = 16/322 (4%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQIT-------FESGTQVAKDQ 95
           PV+VV         +I   G ++P  G +   E +G     T       F+ G +V+K +
Sbjct: 35  PVSVVELKKGSISKLINTTGTVQPTYGASQNAEMSGFYKLQTNPRTGKPFKMGDRVSKGE 94

Query: 96  PLVLLDSAVERANLKSTEAR---LPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSA 152
            ++ L+   E  N  + +A+   L  A+ +  + K L+ KG ++       E        
Sbjct: 95  LIIRLEDK-EYENGIAIDAKKLSLEIAEQEQSKQKALYEKGGVTMSEMRNTEVKVTNARY 153

Query: 153 DIESLKATIARREIKAPFAGVI-GIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDI 211
           D E+ K  + + ++KAPF GVI  + +      ++ G  +V L     M +   +P+  I
Sbjct: 154 DYENAKLNLEKMKVKAPFDGVIVDLPHYTADTRVEQGKAMVSLMAYDKMYMDINLPESSI 213

Query: 212 SRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARA 271
             +   Q V I     P  + K  +  + PA+S ++   + +  I N   KLR GMFA+A
Sbjct: 214 RYVKEAQPVYITHYTIPGDTLKARVGELSPAISTETRTFKGKILIDNDQLKLRPGMFAKA 273

Query: 272 NIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGV 331
           +II+ + ++ + +P+  I        VYIV +   + R  Q     G   E    IL G+
Sbjct: 274 DIIVDRADSSIIIPKDVILSNRRRKYVYIVEKNTAKIRNLQ----TGLEDEYNIEILSGL 329

Query: 332 KPGDVVVTTGQVRLSNGAKVRI 353
              D +V  G   L   AKV+I
Sbjct: 330 NVNDNLVVKGFETLKEDAKVKI 351