Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  121 bits (304), Expect = 3e-32
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 4/291 (1%)

Query: 64  IEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKY 123
           +E  Q   + +  AG+I+ I  E G +V K Q L ++D+  ++ +L  +EA +   + + 
Sbjct: 58  LEAPQEANVVSRIAGLIEAINVEEGDRVQKGQILAVIDAKRQQYDLDRSEAEVKIIEQEL 117

Query: 124 ERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQ 183
            R K +  K  IS +S  + E +  A  A  +  +  +    + +P  G++  R V  G 
Sbjct: 118 NRLKKMTNKEFISADSMAKLEYNLQAAIARRDLAELQVKESHVVSPIDGIVAKRYVKAGN 177

Query: 184 YLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAV 243
             Q   D+  + +   +     +P++ ++ + L QE  +F +   + +    +  I P V
Sbjct: 178 MAQEFGDLFYIVNQDELHGIVHLPEQQLTSLRLGQEAQVFSNQQSKNAIHAKVLRISPVV 237

Query: 244 SVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSE 303
             QSG  +V   +PN +  L++GMF R  +     EN +T+P +A+        +Y++  
Sbjct: 238 DPQSGTFKVTLAVPNQNAHLKAGMFTRVELKYDTHENVITVPYSALINQDNKQALYVIDG 297

Query: 304 ENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIV 354
            N  +R     V++G R      ++ G+KPG+ VVT GQ  L + + V ++
Sbjct: 298 SNANRR----EVEIGYREGDSVEVVSGIKPGEQVVTRGQQNLKDQSLVEVI 344