Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  137 bits (345), Expect = 5e-37
 Identities = 92/313 (29%), Positives = 163/313 (52%), Gaps = 11/313 (3%)

Query: 58  IEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLP 117
           +EAIG  +  + VT+T +   V+  + F+ G  V K   LV L +A + A +K  + ++ 
Sbjct: 51  VEAIGTNKAFESVTITPKVTDVVTSLKFDDGDIVKKGDLLVQLQNAEQIAKVKVAQVKVS 110

Query: 118 AAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIR 177
             + +  R   L    ++++   D  +       A++E  ++++  R I APF G +G+R
Sbjct: 111 DNQRELARISSLVTSRTVAELERDRLQTLIDTTRAELEQAQSSLNDRSIVAPFNGRLGLR 170

Query: 178 NVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSIS 237
            V +G  + PGT+I  L+D S ++L F+VP+R I  +   ++V+    A+P   FKG + 
Sbjct: 171 QVSVGSLVTPGTEITTLDDISKIKLDFSVPERFIQDLQPGKQVEAKAVAFPDEIFKGKVI 230

Query: 238 AIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDN 297
           +I+  V+  +  + V+A+IPN D +L  GM  +  +I  +    + LP++AI        
Sbjct: 231 SIDSRVNPTTRAVIVRAEIPNPDLRLLPGMLMKVKLI-KRSREALMLPESAIIPIQKEHF 289

Query: 298 VYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNG--AKVRIVE 355
           VY V+++N  +R Q   V +G R+     IL G++ G+ VV  G +++  G   K  + E
Sbjct: 290 VYSVNKDNVIERKQ---VTIGIRTRGWVEILGGLEIGENVVIRGLLKVHPGDVVKTELAE 346

Query: 356 -----SDATTPPA 363
                SDA T P+
Sbjct: 347 KFSYLSDANTEPS 359