Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  130 bits (327), Expect = 6e-35
 Identities = 101/362 (27%), Positives = 171/362 (47%), Gaps = 10/362 (2%)

Query: 10  LIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDW--VPVIEAIGFIEPN 67
           +IAI L  +V     F     A    + P     V VVT   V+      I  IG +  +
Sbjct: 5   IIAIALIAAVATAVSFSDVLQAAKPESAPHLMRTVPVVTGEVVEHPLAQSISLIGKLAAD 64

Query: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127
           + V +  +  G I QI   S   V K Q L+ LD    +A +    A L     K   ++
Sbjct: 65  RAVVIAPQVTGKIKQIAVTSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKLREFE 124

Query: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187
            L ++ +I++   D  +AS     A + S +A +    + APFAG  G+ N   G+ +  
Sbjct: 125 KLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGKTGLINFSEGKMVSI 184

Query: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
           GT+++ L+D S MRL   VP+  +S++S+   V     A+P  +F G + AI+P V+ ++
Sbjct: 185 GTELMTLDDLSSMRLDLQVPEHFLSQLSIGMPVSATSRAWPGETFIGKVVAIDPRVNEET 244

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGE 307
             ++++    N+  +L+ GM   + +  P +   + +P  A+ Y+     VY+V E++  
Sbjct: 245 LNLKIRVQFENAKNRLKPGMMMSSTLTFPPISAPI-VPVQALEYSGTKRYVYVVGEDHIA 303

Query: 308 KRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIV----ESDATTPPA 363
            R +   V +G R      I  G+K GD VV  G V + +G K+  V    ++DA  P A
Sbjct: 304 HRTE---VILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKINEVVLEAKNDANRPAA 360

Query: 364 ET 365
           ++
Sbjct: 361 KS 362