Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1008 a.a., RND multidrug efflux transporter; Acriflavin resistance protein from Pseudomonas fluorescens FW300-N2E2

 Score =  968 bits (2503), Expect = 0.0
 Identities = 490/1011 (48%), Positives = 705/1011 (69%), Gaps = 4/1011 (0%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M FTD FI+RPVLA  +S LIVLLG QA  K+ +R+YP+M N +ITV+T Y GA+A+ IQ
Sbjct: 1    MAFTDPFIRRPVLATVVSLLIVLLGFQAWSKLPLRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
            G+ITQP++Q++A A+ ID+MTS S    S I+V  ++ ++ +   +++LAK N V++QLP
Sbjct: 61   GYITQPMQQSLASAEGIDYMTSVSRQNFSVISVYARIGSNSDRLFTELLAKANEVKNQLP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
            ++AEDP ++      +A++YI F S EL + QITDYL RV+ P+L  + G++  ++ G  
Sbjct: 121  QDAEDPVLSREAADASALMYISFFSKELNNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
             +A+R+WLDP K+A   L+AADV + +  +N+ SA G+  GE+++ + +A+T++ + E  
Sbjct: 181  VFAMRLWLDPVKLAGFGLTAADVTNAVRQHNFLSAAGEVKGEYIVTSINANTELKSAEAF 240

Query: 241  ESLVVKAEKGTVTRLGDIAKVTL-AKSHDTYRASANGREAVVAAINAAPSANPINIAKDV 299
             ++ +K +  +   L D+A+V + A+++DT  +S  G  +V   I A P ANP+++ K+V
Sbjct: 241  AAIPLKTDGDSRVLLRDVARVEMGAENYDTI-SSFGGTPSVYIGIKATPGANPLDVIKEV 299

Query: 300  LEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVL 359
             +++P+++  +P+N++  + YD+T+ I  SI EV+KT+ EA LIV+VV+ LFLG+LR+V+
Sbjct: 300  RKIMPDMEAQLPANLKAEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLFLGALRSVV 359

Query: 360  IPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESP 419
            IP+VTIPLS+IGV   MQ+MG+S NL+TLLAMVLAIGLVVDDAIVV+EN+ RHI+EG++P
Sbjct: 360  IPVVTIPLSMIGVMFFMQLMGYSMNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKTP 419

Query: 420  FRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALT 479
            F AAI G REIA+PV++MT+TL AVYAPI L+ G+TG+LFKEFALTLAG+V +SGIVALT
Sbjct: 420  FDAAIEGAREIAMPVVSMTITLAAVYAPIGLLQGLTGALFKEFALTLAGAVVISGIVALT 479

Query: 480  LSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLP 539
            LSPMMC+ +L+ +E P+    ++  + +R+ +RY+RML   +  RPVV+ FA IV   +P
Sbjct: 480  LSPMMCAMLLRHDENPSGLAHRLDMVFERLKSRYQRMLHGTLNTRPVVLVFAVIVLLLIP 539

Query: 540  MLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGV 599
            +L  F  SELAP ED+G+I +M   P   NLDYL    D    I  + PE   +    G 
Sbjct: 540  VLIMFTKSELAPDEDQGIIFMMANAPQPTNLDYLNTYTDHFITIFKEFPEYYSSFQINGY 599

Query: 600  PNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQF 659
                   G   + PW++R  +Q  +   V   ++ +PG+ +  F +P LPG G GLP  F
Sbjct: 600  NGVQSGIGGFLLKPWNERSRTQMEILPEVQAKLESVPGLQIFGFNLPSLPGTGEGLPFAF 659

Query: 660  VITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQD 719
            VI +P ++ +L  IA  V      +  F + D+DL FD   + ++ID+ KA   GV+MQD
Sbjct: 660  VINSPKDYATLLEIAERVKKRALESGKFAFMDIDLAFDKPEVVVDIDRAKAAQMGVSMQD 719

Query: 720  IGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLV 779
            +G TL+T++ +  +NR  L GRSY+VI QVER +R NP+ +N+YYV+ A G+ +PL +L+
Sbjct: 720  LGGTLATLLGEAEINRFTLEGRSYKVIAQVERPFRDNPDWLNNYYVKNAKGESLPLSTLI 779

Query: 780  TIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEAR 839
             +   A PR L  F QLN+ T+   P    +MG+AI     +A  + P G++ DY G +R
Sbjct: 780  KVSDRARPRQLNQFQQLNAVTISGFPV--VSMGEAIETVRQIAREEAPAGFAFDYAGASR 837

Query: 840  QYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMN 899
            Q+V EGSAL+ TF LALAIIFLVLA QFES RDPLVI+V+VPL+ICGALI L  G ++MN
Sbjct: 838  QFVQEGSALWVTFALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGWSSMN 897

Query: 900  IYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIA 959
            IY+QVGL+TL+GLI+KHGILI E A + +    L+  EAV  AA +RLRP+LMTTAAM+ 
Sbjct: 898  IYTQVGLVTLIGLISKHGILIVEFANQLRREQNLTPREAVEQAASIRLRPVLMTTAAMVF 957

Query: 960  GLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHKP 1010
            G++PL++ATGAGA  RF IG VI +G++IGTLFTLFVLP +Y+ LA+  KP
Sbjct: 958  GMVPLIFATGAGAVSRFDIGTVIATGMSIGTLFTLFVLPCVYTLLAKPDKP 1008