Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1018 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  964 bits (2492), Expect = 0.0
 Identities = 480/1006 (47%), Positives = 695/1006 (69%), Gaps = 2/1006 (0%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M FTD FI+RPVLA  IS LIVLLG+QA   + +R+YP+M + +ITV+T Y GA+A+ IQ
Sbjct: 1    MAFTDPFIRRPVLASVISLLIVLLGMQAFNSLTIRQYPQMESALITVTTAYPGANAETIQ 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
            G+ITQPL+Q++A A+ +D+MTS S    S I+V  ++  D +   +++L++ NSV++QLP
Sbjct: 61   GYITQPLQQSLASAEGVDYMTSVSQQNASVISVYARIGADTDRLYTELLSQANSVKNQLP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
            + AEDP +      +TA++YI F S++L++ QITDYL RV+ P+L  + G++  ++ G  
Sbjct: 121  QAAEDPVLNKQAADSTALMYISFYSDQLSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
             +A+R+WLDP K+AA  +SA DV   +   N+ SA G+  G++V+ + +ADT++ T E  
Sbjct: 181  VFAMRLWLDPVKLAAYGVSAGDVNEAVRKYNFLSAAGEVKGQYVVTSINADTELKTPEAF 240

Query: 241  ESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVL 300
             ++ +K +  +   LGD+A+V +        +S +G  +V   I   PSANP+++ K+V 
Sbjct: 241  AAIPLKTQGDSRVLLGDVARVEMGAESYNSISSFDGIPSVYIGIKGTPSANPLDVIKEVR 300

Query: 301  EMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLI 360
             ++P+++  +P  ++ ++ YD+T  I  SI EV+KT+ EAA+IV+VV+ LFLGSLR VLI
Sbjct: 301  AIMPQIEAQLPPGLKASIAYDATEFIQASIDEVVKTLAEAAVIVIVVVFLFLGSLRTVLI 360

Query: 361  PIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPF 420
            P+VTIPLS+IGV   MQ MG+S NL+TLLAMVLAIGLVVDDAIVV+EN+ RHI++G+SPF
Sbjct: 361  PVVTIPLSMIGVMFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEQGKSPF 420

Query: 421  RAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480
            +AAI G REIA+PV+ MT+TL AVYAPI  + G+TG+LF+EFALTLAG+V +SG+VALTL
Sbjct: 421  QAAIDGAREIAMPVVTMTITLAAVYAPIGFLQGLTGALFQEFALTLAGAVLISGVVALTL 480

Query: 481  SPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLPM 540
            SPMMCSK+L+  E P+ F  ++  L +R+  RY+R L   +  RPVV+ FA +V A +P 
Sbjct: 481  SPMMCSKLLRHEENPSGFAHRLDELFERLKQRYQRALHGTLNTRPVVLVFAVLVLALIPA 540

Query: 541  LFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGVP 600
            L  F  SELAP ED+G++ +M + P  ANLDYL    D   +I    PE        G  
Sbjct: 541  LLMFTESELAPEEDQGIVFMMASAPKTANLDYLNAYTDQFLEIFKSFPEYYSWFQINGFD 600

Query: 601  NSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQFV 660
                  G   + PW +RE SQ  +   V   +  +PG+ +  F +P LPG G GLP QFV
Sbjct: 601  GVQSGIGGFLLKPWDERERSQMEILPEVQAKLDRLPGLQIFGFNLPSLPGTGEGLPFQFV 660

Query: 661  ITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDI 720
            I T +++E+L  +   +    + +  F + D+DL FD   + + ID++KA   GV+M+++
Sbjct: 661  INTANDYETLLQVTERIRKRAEESGKFAFLDVDLAFDKPEIVVEIDREKAAQMGVSMEEL 720

Query: 721  GITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSLVT 780
            G+TLST++ +G +NR  + GRSY+VI QVER +R NP+ +++YYVR   G+++PL +L+ 
Sbjct: 721  GLTLSTLLGEGEINRFTIEGRSYKVIAQVERAYRDNPDWLSNYYVRNGQGQMLPLSTLIK 780

Query: 781  IDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEARQ 840
            +   A P  L  F QLN+A +   P    +MG+AI+  + +A  + P G+  DY G +RQ
Sbjct: 781  VRDRARPTQLKQFQQLNAAMIQGFPI--VSMGEAIDTLQTIAREEAPDGFGFDYAGASRQ 838

Query: 841  YVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATMNI 900
            Y+ EG+ALY TF LALA+IFLVLA QFES RDPLVI+V+VPL++CGAL+ L  G ++MNI
Sbjct: 839  YIQEGNALYMTFALALAVIFLVLAAQFESFRDPLVILVTVPLSVCGALVPLFLGLSSMNI 898

Query: 901  YSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAG 960
            Y+QVGL+TL+GLI+KHGI+I E A + +    LSR EAV  AA +RLRP+LMTTAA + G
Sbjct: 899  YTQVGLVTLIGLISKHGIMIVEFANQLRREQGLSRREAVEEAAAIRLRPVLMTTAATVFG 958

Query: 961  LIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAE 1006
            ++PL+ A+GAGA  RF IG+VI +G+++GTLFTLFVLP +Y  +A+
Sbjct: 959  MVPLIIASGAGAVSRFDIGLVIATGMSVGTLFTLFVLPAVYDLVAQ 1004