Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1061 a.a., efflux RND transporter permease subunit from Synechocystis sp000284455 PCC 6803

 Score =  523 bits (1348), Expect = e-152
 Identities = 330/1024 (32%), Positives = 538/1024 (52%), Gaps = 26/1024 (2%)

Query: 3    FTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGF 62
            F D FIKRPV +   + +I+L+G  +IF + + ++PE+  T I VS+ Y GA+A++++  
Sbjct: 2    FVDFFIKRPVFSSVCAIIILLVGTISIFSLPIAQFPEVAPTTIQVSSNYSGANAEVVERA 61

Query: 63   ITQPLEQAVAQADNIDFMTSQSVL-GRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPK 121
            +T  LE+ +     + +++S S   G S+ITVT   + + + A  DV  +      QLP+
Sbjct: 62   VTDILERQINGVQGMRYISSTSSNDGTSSITVTFDRSQNKDIAAVDVQNRVALAEPQLPE 121

Query: 122  EAEDPTVTMSTGSTTAVLYIGFTS--NELASSQITDYLERVVNPQLYAVNGVSSIDLYGG 179
                  + ++  S   +L IG TS   E  +  +++Y +R +   +  + GV  + ++G 
Sbjct: 122  AVRRTGIRVNKESNALLLGIGITSPDGEYDNVFLSNYADRYLVDPIRRLEGVGDVRIFGE 181

Query: 180  MKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQA------IGEFVLYNGSADTQ 233
              YA+R+W+DP K+AA  L+ AD+   L   N Q   GQ        G+    +  A +Q
Sbjct: 182  RLYAMRLWVDPMKLAAQQLTMADLSRALQEQNLQVGAGQIGAEPAPPGQEYQLDLLASSQ 241

Query: 234  VSTVEDLESLVVKA-EKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANP 292
            +  V+D E L+VK+   G+V R  DI +V L   +        G EAV   I     +N 
Sbjct: 242  LVEVKDFEDLIVKSGASGSVVRFKDIGRVELGAQNYNSFLRFRGDEAVGLGIYQLLDSNA 301

Query: 293  INIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFL 352
            + +A+ V + +  L +N P  IE +V +D+T  + ES+ EV++T++ A ++V++VI +FL
Sbjct: 302  LEVARLVKDEMARLAQNFPEGIEYSVAFDTTEFVQESLSEVVETLLIAVVLVILVILVFL 361

Query: 353  GSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRH 412
               R+ LIP +TIPL+LIG    +++  FS N +TL  + LA GLVVDDAI+V+E + R 
Sbjct: 362  QDWRSALIPALTIPLALIGTFAFVKVFNFSINSLTLFGLTLATGLVVDDAIIVVEQISRF 421

Query: 413  IK-EGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVF 471
            IK + E P  AA     E+   VIA +L L AV+ P+A   G TG+L+++FALT+A S+ 
Sbjct: 422  IKVKHEDPQEAAQEAMGELTGAVIATSLVLMAVFIPVAFFPGTTGALYQQFALTIAFSIL 481

Query: 472  VSGIVALTLSPMMCSKMLKANEAPNKFELKV----HHLLDRMTARYERMLTAVMAHRPVV 527
            +S  +ALTL+P +C+ +L+  + P  F        + +LD +   Y  +L  ++  R  V
Sbjct: 482  LSTFLALTLTPSLCALLLREGQEPPAFIAGFFNWFNRVLDIIKNGYGNVLGKLVNLRAWV 541

Query: 528  IAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQ 587
            I    ++  +   L+  +P+   P ED+G  + +   P   +L Y +  M  V K L   
Sbjct: 542  IGVFVLLLGATAWLYVTVPTAFLPEEDQGYFITIIQAPQGVSLQYTSRVMAQVEKELLAV 601

Query: 588  PEVQFAQVFTGVPNS----NQAFGIASMVPWSQREASQATVTNRVGTLV---QDIPGMAV 640
            PEV       G   S    NQ      + PW +R A   +V   +G +      IP   +
Sbjct: 602  PEVTATFAVGGFSFSGNSPNQGIIFTRLKPWGERTAPNQSVQAIIGQMFGKFSQIPEANI 661

Query: 641  TAFQMPELPGAGS--GLPIQFV-ITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFD 697
                 P + G G   G   Q   +   S  +++     ++L     NP           +
Sbjct: 662  IPINPPPIRGLGQFGGFDFQLQDLRVNSELDTMVGTMGEILGAANQNPALTRVFSTFQAN 721

Query: 698  SATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNP 757
            +  + +N++++KA + GV +  I  T+ T +   YVN   L GR+Y V  Q + ++R +P
Sbjct: 722  NPQLIVNVNRNKAKSLGVPVDQIFQTMETALGSSYVNDFVLQGRTYRVYLQADEQFRSSP 781

Query: 758  ESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINW 817
            E +NS YVR+  G +IP+ +LVT+        + H+N   S  +      G + G A+N 
Sbjct: 782  EDINSLYVRSESGTMIPMANLVTVTQGVGAPIITHYNLFRSIAITGSANFGVSTGQAMNA 841

Query: 818  FENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIM 877
               +A   +P G+   + G + + +         FGL L  +FLVLA Q+E+  DP++I+
Sbjct: 842  MAAIARQVMPPGFDFQWSGISLEEMGSQGQAPLIFGLGLLFVFLVLAAQYENYIDPVIIL 901

Query: 878  VSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIE 937
            +SVPLAI GAL A +      ++Y Q+GL+ L+GL +K+ ILI E A + +        +
Sbjct: 902  LSVPLAILGALTAQSLRGFPNDVYCQIGLVMLIGLSSKNAILIVEFANQLRAEG-YPIAK 960

Query: 938  AVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVL 997
            A + A+K RLRPILMT  + + G+ PL  ATGAGA  R ++G  +  G+ + T  +LFV+
Sbjct: 961  AALEASKDRLRPILMTALSTLFGIFPLAIATGAGAGSRQALGTAVFGGMLVATFLSLFVV 1020

Query: 998  PVIY 1001
            PV+Y
Sbjct: 1021 PVLY 1024