Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1044 a.a., Cation/multidrug efflux pump from Sinorhizobium meliloti 1021

 Score =  483 bits (1244), Expect = e-140
 Identities = 308/1024 (30%), Positives = 540/1024 (52%), Gaps = 26/1024 (2%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M  +  FI RP LA  I+ ++ + G  A+F++ + ++P++T   + V+  Y GA+A +++
Sbjct: 1    MNLSAHFIDRPRLATVIAVVMAIAGALALFQIPIAQFPQITPPEVQVTASYPGANASVLE 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVL-GRSTITVTMKLNTDPNAALSDVLAKTNSVRSQL 119
              +  P+E  V   +++ +M+S S   G  ++TVT  + TDP  A  +V  +      +L
Sbjct: 61   ESVGAPIEDQVNGVEDMLYMSSSSTNNGTYSLTVTFAVGTDPALAQVNVQNRVALATPRL 120

Query: 120  PKEAEDPTVTMSTGSTTAVLYIGFTSNELASSQI--TDYLERVVNPQLYAVNGVSSIDLY 177
            P       V++   S++ ++ +   S E    +I  ++Y    +   +  V GV    ++
Sbjct: 121  PASVTQTGVSVRARSSSMLMGVAIYSPEGTRDEIFISNYAANNIRDAIARVAGVGEAGIF 180

Query: 178  GGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQ------AIGEFVLYNGSAD 231
            G   Y++R+W++P +M AL L+A D+ S + A N Q++ GQ        G+ +     A 
Sbjct: 181  GP-SYSMRIWMNPDRMQALGLTATDLTSAIQAQNAQASAGQLGSPPATSGQQLQLTIMAQ 239

Query: 232  TQVSTVEDLESLVVKAE-KGTVTRLGDIAKVTL-AKSHDTYRASANGREAVVAAINAAPS 289
             +++T ED  +++V+   +G + RL D+A+V L A+S+DT  ++ NG+ +    +  +  
Sbjct: 240  GRLATEEDFSNIIVRTNTEGALVRLRDVARVELGAQSYDT-ASTFNGQPSATVVVYQSAE 298

Query: 290  ANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVIT 349
            AN + +++ VL  L  L +  P ++   +++D+T  I E+I E+  T+     +V+ V  
Sbjct: 299  ANALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITETIKEIAITLAITFALVVAVTY 358

Query: 350  LFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV 409
             FL   RA +IP +TIP+SLIG   V+ ++ +S N +TL A++LAI LVVDDAI+V+ENV
Sbjct: 359  FFLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITLFAVILAISLVVDDAIIVVENV 418

Query: 410  DRHIKEGESPFRAAIIGTR-EIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAG 468
             R + E       A   T  ++  P++A TL L A++ PIA + GITG L+++F++T+  
Sbjct: 419  KRLMAEERLNVHDATRRTMSQVTGPIVATTLVLAALFVPIAFVAGITGQLYRQFSVTILI 478

Query: 469  SVFVSGIVALTLSPMMCSKMLKA-NEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVV 527
            ++  S I ALTLSP +C  ML++  E  +      +  LD     Y  ML  +     + 
Sbjct: 479  TITFSTINALTLSPALCVLMLRSPREQRSGIFGTFNRGLDFSRNWYVAMLDRMSRRLWIA 538

Query: 528  IAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQ 587
                  +   +  LF+ +P+   PSED+G + +    P+ A+L+     +D V++IL   
Sbjct: 539  SVILLAILGGVYGLFRALPTGFVPSEDQGYLFINVQLPNAASLERTQQALDTVSRILQRT 598

Query: 588  PEVQFA-----QVFTGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQD---IPGMA 639
            P V  +         G   SN    I ++ PW +R +++ ++   +  L  D   IP  +
Sbjct: 599  PGVANSVGIAGNSMVGGGGSNAGMVITALKPWGERRSAEESIDAIMNRLRADFGRIPTAS 658

Query: 640  VTAFQMPELPGAGS--GLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFD 697
            V  F  P +PG G+  G  ++    +  + + +  +   ++ +    P         + D
Sbjct: 659  VVPFNPPAIPGLGTTGGFDLRLQARSGQSQQEIAEVMRGLIVKANQTPGLASVFSTFSAD 718

Query: 698  SATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNP 757
               + +N+D+ +A  +GV+   I   + + +   YV+  ++  R Y+V  Q E ++R   
Sbjct: 719  VPQVFLNVDRRRAELFGVSTATIFNAMQSHLGSSYVDDFNIFSRVYQVRIQDEPQFRSRI 778

Query: 758  ESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINW 817
            E +    VR+ +G+++PL SL++I     P ++  +N   SA++    A GT+ G A+  
Sbjct: 779  EDIQRLRVRSRNGELVPLQSLLSISTSYGPTAINRYNLFPSASINGQAATGTSTGQALAT 838

Query: 818  FENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIM 877
              +LA   LP+G+  ++ G A Q    G+       + L   +L L  Q+ES   PL +M
Sbjct: 839  MASLAEQNLPEGFGFEWTGLALQEEQAGNQTALILLMGLIFTYLFLVGQYESWSVPLAVM 898

Query: 878  VSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIE 937
            +SV +A+ GAL+ L   +  +NIY+Q+GL+ L+GL  K+ ILI E AKE +    ++  E
Sbjct: 899  LSVAVAVLGALVGLMLASIDINIYAQIGLVLLIGLAAKNAILIVEFAKERR-DKGMATPE 957

Query: 938  AVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVL 997
            A       R RP+LMT  A I G+IPL+ ATGAGA  R +IG+ +  GL +GT+  L ++
Sbjct: 958  AAAAGTAQRFRPVLMTAMASILGVIPLVIATGAGAGSRRAIGMTVFGGLLVGTVVGLLLI 1017

Query: 998  PVIY 1001
            PV Y
Sbjct: 1018 PVFY 1021