Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1034 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  638 bits (1646), Expect = 0.0
 Identities = 384/1048 (36%), Positives = 604/1048 (57%), Gaps = 29/1048 (2%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M  TD+ +KRPV A  IS L++  GL A  K+ +REYP +   V+++ T Y GASA +++
Sbjct: 1    MILTDLSVKRPVFASVISLLLIAFGLVAFDKLPLREYPHIDPPVVSIETNYRGASASVVE 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
              ITQ +E  V+  + I  ++S S  GRS++T+   +N D  AA +D+  + +S+ + LP
Sbjct: 61   SRITQLVEDRVSGVEGIRHISSSSSDGRSSVTLEFNINRDIEAAANDIRDRVSSMLNNLP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
            +EA+ P +  + G    ++++   S+ + + ++TDY  R +  +  AV+GV+ + L GG 
Sbjct: 121  EEADPPEIRKANGGDEVIMWLNLVSDSMNTLELTDYANRYLADRFSAVDGVAMLRLGGGK 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
             YALR+W+D   +AA NL+ AD+ S L + N +   G    +   +    +    T ED 
Sbjct: 181  VYALRIWVDRQALAARNLTVADIESKLRSENVELPAGSVESKERHFTVRLERTFRTSEDF 240

Query: 241  ESLVV-KAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDV 299
             +LV+ + + G + +LGD+AK+ L    +      N    +   +    +AN + +A+ V
Sbjct: 241  ANLVLAQGDDGYLVKLGDVAKIELGSEEERIMFRGNRESMIGLGVTKQSTANTLEVARAV 300

Query: 300  LEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVL 359
             +++ ++   +P  +E+   YDS+V I  SI EV  T++ A L+V++VI LFLGS+ A+L
Sbjct: 301  NKLVDQINPTLPPGMEIKRSYDSSVFIEASIKEVYTTLIIAMLLVILVIYLFLGSVHAML 360

Query: 360  IPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESP 419
            IP VT+P+SL+G  +V+  +G++ NL+TLLAM+LAIG+VVDDAIV+LEN+ R I+EGESP
Sbjct: 361  IPAVTVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGESP 420

Query: 420  FRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALT 479
              A+ +G RE+A  V+A TL L AV+ PI  + G  G LFKEFA+T++ +V  S +VAL+
Sbjct: 421  LVASFLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVMFSSLVALS 480

Query: 480  LSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLP 539
            LSPMMCSK+L+     +    KV   +D +   Y   L   + H P+ ++   I    L 
Sbjct: 481  LSPMMCSKLLRPTSESSWLVKKVDKGMDWLEHTYRSSLERTIRH-PLAVSLTVIAALGLS 539

Query: 540  M-LFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTG 598
            + + + +P E AP ED+G + LM  GP  A+ +Y+   M++V + L   P V+  ++   
Sbjct: 540  VWMMQKVPQEFAPREDRGSMFLMVNGPQGASYEYIEKYMNEVEERL--MPMVESGEIKRL 597

Query: 599  VPNSNQAFG----------IASMVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQ-MPE 647
            +  + + FG          I  +  WS R  +   + N +   + D+ G  V AF  M +
Sbjct: 598  LIRAPRGFGRSADFSNGMAIIVLEDWSARR-NAFDIMNDIRGKLSDLAG--VQAFPIMRQ 654

Query: 648  LPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDK 707
              G G G P+QFVI  PS +E L      ++ +   NP  +  D D        ++ ID+
Sbjct: 655  GFGRGVGKPVQFVIGGPS-YEELAQWRDILMAKAAENPKLLALDHDYKETKPQFRVVIDR 713

Query: 708  DKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRA 767
            D+A   GV++  IG TL +M+    V     +G  Y+VI + +R  +   + +++ YVR+
Sbjct: 714  DRAADLGVSISHIGRTLESMLGSRLVTTFMRDGEEYDVIIEGDRAKQNTAQDLSNIYVRS 773

Query: 768  -ADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKL 826
                ++IPL +LV +   A+  SL  +N++ + T+ A  A G ++G+A+++  +   + L
Sbjct: 774  DRTRELIPLSNLVHVQEFADASSLNRYNRMRAITIEANLADGYSLGEALDYLNDTVRTYL 833

Query: 827  PKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICG 886
            P      Y G++  Y   G+++Y  F LAL ++FLVLA QFES   P VIM++VPLA  G
Sbjct: 834  PAEAVVSYKGQSLDYQESGNSMYFVFVLALGVVFLVLAAQFESYIHPAVIMLTVPLATLG 893

Query: 887  ALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNK-LSRIEAVMHAAKV 945
            ALI L     T+NIYSQ+G+I LVGL  K+GILI E A   QL ++ +  IEA++ A+  
Sbjct: 894  ALIGLWLTGQTINIYSQIGIIMLVGLAAKNGILIVEFA--NQLRDRGVDFIEALLTASTQ 951

Query: 946  RLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLA 1005
            RLRPILMT     AG +PL+ A GAGA  RF IG+V++SG+ + T+FTL V+P  Y+  A
Sbjct: 952  RLRPILMTGITTAAGAVPLVMAQGAGAETRFVIGVVVLSGIILATIFTLMVIPTAYALFA 1011

Query: 1006 EKHKPLPVFVEDKDLEKLARIDEAKAAH 1033
             +H   P  V  K   +LA     KA H
Sbjct: 1012 -RHSGSPDAVAQKLEAELA----GKAKH 1034