Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1052 a.a., Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) from Rhodospirillum rubrum S1H

 Score =  527 bits (1358), Expect = e-153
 Identities = 321/1043 (30%), Positives = 547/1043 (52%), Gaps = 37/1043 (3%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M  +  FI RP+ A  IS +I+L GL ++  + + EYPE+    + V   + GA+  +I 
Sbjct: 1    MSLSKFFIDRPIFAGVISTVILLAGLISMVLLPISEYPEVVPPSVIVKAQFPGANPKVIA 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVL-GRSTITVTMKLNTDPNAALSDVLAKTNSVRSQL 119
              +  PLE+ +   +++ +M+SQ+   G  T+T++ KL TDP+ A   V  + N   ++L
Sbjct: 61   QTVATPLEEQINGVEDMLYMSSQAASDGTMTLTISFKLGTDPDLATQLVQNRVNQALTRL 120

Query: 120  PKEAEDPTVTM--STGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLY 177
            P+      VT   S+   T V+++   +       + +Y    V  QL  + G+ S+ L+
Sbjct: 121  PEVTRQLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGIGSVQLF 180

Query: 178  GGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATG------QAIGEFVLYNGSAD 231
            G   YA+R+WLDP K+A   ++A +V++ +   N Q A G         G  V    +A 
Sbjct: 181  GSGDYAMRIWLDPQKVAERGMTATEVIAAIRRQNVQVAAGVIGGPPYGTGVAVQVPVNAQ 240

Query: 232  TQVSTVEDLESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSAN 291
             +++  ++   +++K + G VTRL D+A++ L  +    R+  + + AV   +  AP +N
Sbjct: 241  GRLTDADEFREIIIKRDGGVVTRLKDVARIDLDAAQYGLRSLLDNKPAVAIPVFQAPGSN 300

Query: 292  PINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLF 351
             I I+  V   + EL+K+ P  ++  + YD TV +  SI  V+ T++EA  +V++V+ LF
Sbjct: 301  AIEISNQVRATMAELKKSFPEGLDYAIAYDPTVFVRGSIEAVVHTLLEAVALVVIVVILF 360

Query: 352  LGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDR 411
            L + RA +IP++ +P+S+IG   VM + GFS N ++L  +VLAIG+VVDDAIVV+ENV+R
Sbjct: 361  LQTWRASIIPLLAVPISIIGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVER 420

Query: 412  HIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVF 471
            +I+ G SP  A +   RE+  P+IA+ L L AV+ PIA + G+TG  +++FALT+A S  
Sbjct: 421  NIENGLSPRDATLKAMREVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFSTV 480

Query: 472  VSGIVALTLSPMMCSKMLKANEAP------------NKFELKVHHLLDRMTARYERMLTA 519
            +S   +LTLSP +   +L+   AP              F    + +    +  Y R +  
Sbjct: 481  ISAFNSLTLSPALAVTLLRGEGAPKDALTRGMDRVLGPFFRGFNRVFHASSHGYGRGVGG 540

Query: 520  VMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDD 579
            ++  + + +     +  +  + F  +P    PS+DK  ++     P  A LD   + +  
Sbjct: 541  ILGRKSLAMLVYVGLLGATYLGFAQVPPGFVPSQDKQYLVGFAQLPEGATLDRTESVIRA 600

Query: 580  VNKILSDQPEVQFAQVFTGV--------PNSNQAFGIASMVPWSQREASQAT---VTNRV 628
            ++ I    P V+ A  F G+        P++   F   ++ P+ QRE+++ +   ++ R+
Sbjct: 601  MSDIALRDPGVESAIAFPGLSINGFINSPSAGVVF--VTLKPFEQRESAELSGFAISQRL 658

Query: 629  GTLVQDIPGMAVTAFQMPELPGAGS--GLPIQFVITTPSNFESLFTIATDVLTEVKANPM 686
                  +    +  F  P + G G+  G  +Q    T   +E+L      VL +    P 
Sbjct: 659  QQRYAGVSEAFIAIFPPPPVQGLGTIGGFKLQVEDRTDQGYEALDQTMKAVLAKAATTPE 718

Query: 687  FVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVI 746
                       +  +  ++D+ KA   GV +Q++  T+   +   YVN  +  GR+Y+VI
Sbjct: 719  LAGVFSSYKIGTPELYADLDRTKAAQLGVDVQEVFDTMQIYLGSLYVNDFNKFGRTYQVI 778

Query: 747  PQVERKWRLNPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPA 806
             Q +  +R  P+ +     R  DG+++PLG++VT+   + P S   +N   SA +   PA
Sbjct: 779  AQADGAFRSKPDDILRLQTRNFDGRMVPLGAVVTLSDTSGPDSAMRYNAFRSADLNGGPA 838

Query: 807  PGTAMGDAINWFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQ 866
            PG + G A      L +  LPKG   ++     Q +  G+     F L + ++FLVLA Q
Sbjct: 839  PGYSTGQAQGAMTKLLAETLPKGMDFEWTELTYQQILAGNTTMMVFPLCVLLVFLVLAAQ 898

Query: 867  FESLRDPLVIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKE 926
            +ESL  PL I++ VPL +  A+  +       N+++Q+GL  L+GL  K+ ILI E A+E
Sbjct: 899  YESLFLPLAIILIVPLCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFARE 958

Query: 927  EQLHNKLSRIEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGL 986
             ++  +   + A + AA++RLRPILMT+ A I G++PL+ ++GAGA  R ++GI + SG+
Sbjct: 959  LEIDGQ-DTVPAAIEAARLRLRPILMTSIAFIMGVVPLVISSGAGAEMRHAMGIAVFSGM 1017

Query: 987  AIGTLFTLFVLPVIYSYLAEKHK 1009
               T+F LF+ PV Y  +    K
Sbjct: 1018 LGVTVFGLFLTPVFYVLMRSLEK 1040



 Score = 45.1 bits (105), Expect = 3e-08
 Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 20/259 (7%)

Query: 250  GTVTRLGDIAKVTLAKSHDTYR-ASANGREAVVAAINAAPSANPINIAKDVLEMLPELQK 308
            G V  L D +    A  ++ +R A  NG  A   +   A  A           M   L +
Sbjct: 808  GAVVTLSDTSGPDSAMRYNAFRSADLNGGPAPGYSTGQAQGA-----------MTKLLAE 856

Query: 309  NMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIP---IVTI 365
             +P  ++    ++ T    + I     T++   L VL+V  +      ++ +P   I+ +
Sbjct: 857  TLPKGMD----FEWTELTYQQILAGNTTMMVFPLCVLLVFLVLAAQYESLFLPLAIILIV 912

Query: 366  PLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPFRAAII 425
            PL L+     + + G   N+ T + + + IGL   +AI+++E       +G+    AAI 
Sbjct: 913  PLCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFARELEIDGQDTVPAAIE 972

Query: 426  GTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMC 485
              R    P++  ++       P+ +  G    +     + +   +    +  L L+P+  
Sbjct: 973  AARLRLRPILMTSIAFIMGVVPLVISSGAGAEMRHAMGIAVFSGMLGVTVFGLFLTPVF- 1031

Query: 486  SKMLKANEAPNKFELKVHH 504
              ++++ E       KVHH
Sbjct: 1032 YVLMRSLEKRVTGTQKVHH 1050