Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1034 a.a., MexW/MexI family multidrug efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score = 1005 bits (2599), Expect = 0.0
 Identities = 513/1011 (50%), Positives = 700/1011 (69%), Gaps = 5/1011 (0%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M  TD+FIKRPVL++ +S LI+L+G +A   + +R+YP+++NTV+T++T Y GAS DL+Q
Sbjct: 1    MVLTDIFIKRPVLSLVVSMLILLIGFRAAMTLPIRQYPKLSNTVVTITTAYPGASPDLMQ 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
            GFIT PLEQAVA A+ +D++TS S  G+S ITV +KLN DPN AL++VLAK NSV+  +P
Sbjct: 61   GFITTPLEQAVASAEGVDYITSSSTQGQSLITVYVKLNFDPNQALTEVLAKVNSVKYLIP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
            KEA DP +  STG TTAV+YIGF SNEL+ S I+DYL RVV P L  V+GV+S D+ GG 
Sbjct: 121  KEANDPVIVKSTGQTTAVMYIGFASNELSGSAISDYLTRVVQPVLSTVDGVASADILGGQ 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
             +A+R+WLDP +MA   +SA D+ + + ANN+Q+A GQ  G   + N + +T +  V+  
Sbjct: 181  TFAMRIWLDPIRMAGRGVSANDITAAIQANNFQAAAGQTKGYLTVSNITTNTDLQNVDQF 240

Query: 241  ESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVL 300
            + ++VKA+ G   R+ D+A V LA        + +G  A+   + A P  NP+NI   V 
Sbjct: 241  KRMIVKAQGGGFVRMEDVATVELAAQSTDSSVAFSGERAIFIGVQATPQGNPLNIVTGVR 300

Query: 301  EMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLI 360
             + PE+++N+P ++ M V YDST  I  SI EV KT++EA  IV+VVI LFL S R+V+I
Sbjct: 301  ALFPEIERNLPPSMSMKVAYDSTKFIRSSIDEVEKTLIEAVGIVIVVIFLFLASFRSVII 360

Query: 361  PIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPF 420
            P+VTIPLSLIGV   M  MGFS NL+TLLAMVLAIGLVVDDAIVV+EN+ RH++EG+SP 
Sbjct: 361  PVVTIPLSLIGVCTAMLAMGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHLEEGKSPV 420

Query: 421  RAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480
            +A++IG REI  PVI+MT+TL AVYAPI  +GG+TG+LF+EFA TLAGSV VSGI+ALTL
Sbjct: 421  QASLIGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAGSVIVSGIIALTL 480

Query: 481  SPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLPM 540
            SPMMCS +LK  E+   F  KV H+   +T  Y R L   + +RP+   FA ++   +  
Sbjct: 481  SPMMCSVLLKHQESQGWFARKVDHVFSSITRWYGRQLDRSLDYRPITGLFAVVILGLVGF 540

Query: 541  LFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGVP 600
            ++     ELAP ED+G++  +   P  AN+DY     + ++K  +  PE     +  G  
Sbjct: 541  MYTHTSKELAPEEDQGIVFAVTKAPKYANIDYANYYGEKLDKAYASFPETDLRFILNGTS 600

Query: 601  NSNQAFGIASMV--PWSQREASQATVTNRVGTLVQDIPGMAVTAFQMPELPGAGSGLPIQ 658
              N   GIA M+  PW +R+ +   +   V   +  I G+   AF +P LPG   GLPIQ
Sbjct: 601  GPNN--GIAGMLLKPWDERKRTAMQLKPLVQKELSKIEGVNAFAFNLPPLPGGPGGLPIQ 658

Query: 659  FVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQ 718
             VI + + F +++     +    + + +F+ +D DL+F+   +++ ID+ KA   G+ MQ
Sbjct: 659  MVINSTAGFRAVYEEMVKLKDAARKSGLFIVADSDLDFNQPVVRVTIDRTKASDLGINMQ 718

Query: 719  DIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAADGKVIPLGSL 778
             +G TL+T++   YVNR +L GRSY+VIPQV R  RL P+S++ +YV +A G+ +PL +L
Sbjct: 719  RLGTTLATLLGGNYVNRFNLEGRSYQVIPQVPRADRLTPQSLDGFYVPSASGQQVPLSTL 778

Query: 779  VTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLPKGYSHDYMGEA 838
            VTI+   +P +L HFNQLNSAT  AVP PG  +G A+++ E  A + LP G+SHDY+ +A
Sbjct: 779  VTIETATDPNALSHFNQLNSATFQAVPMPGVTVGQAVDFLEQQAKN-LPSGFSHDYLADA 837

Query: 839  RQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTATM 898
            RQYV EG+ L  TFG AL IIFLVLA QFESLRDPLVIM+SVP+AI GALI L +G AT+
Sbjct: 838  RQYVQEGNQLAITFGFALIIIFLVLAAQFESLRDPLVIMISVPMAISGALIPLFFGVATI 897

Query: 899  NIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAAMI 958
            NIY+QVGL+TLVGLI+KHGIL+ E A+E Q+   L +  A+  +A+VRLRPILMTTAAM+
Sbjct: 898  NIYTQVGLLTLVGLISKHGILMVEFARELQIKEALDKRTAIEQSARVRLRPILMTTAAMV 957

Query: 959  AGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHK 1009
             GL+PL+ A+GAGAA RFSIG+V+VSG+ IGTLFTLFVLP +Y  +   H+
Sbjct: 958  TGLLPLLTASGAGAASRFSIGLVVVSGMMIGTLFTLFVLPAVYVAIGTDHR 1008