Pairwise Alignments
Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1040 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4
Score = 545 bits (1405), Expect = e-159
Identities = 336/1026 (32%), Positives = 561/1026 (54%), Gaps = 34/1026 (3%)
Query: 4 TDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFI 63
++ FI RP A IS ++ L+GL +I + V E+PE+ ++VST Y GASAD+++ I
Sbjct: 3 SEFFIHRPKFAFVISTVLTLVGLISIPILSVAEFPEIAPPQVSVSTSYSGASADIVKDTI 62
Query: 64 TQPLEQAVAQADNIDFMTSQSVL-GRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKE 122
QP+E V + + +M S+S G ++ VT + TD + A V + +LP+E
Sbjct: 63 AQPIEAEVNGVEGMLYMQSKSANDGSYSLNVTFDVGTDADMAQVKVQNRVQQAMPRLPEE 122
Query: 123 AEDPTVTMSTGSTTAVLYIGFTS-NELASSQ-ITDYLERVVNPQLYAVNGVSSIDLYGGM 180
+ V + S ++ + S NE S IT+Y V L NGVS + + G +
Sbjct: 123 VKRQGVKVEKQSPNILMVVNLVSPNETFDSLFITNYAGLNVKDALARQNGVSKVQVIGAL 182
Query: 181 KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVL-------YNGSADTQ 233
YA+R+WLDP +MA+ ++A+DV++ L N Q A G+ IG + Y +
Sbjct: 183 DYAIRIWLDPNQMASFGVTASDVIAALREQNIQVAAGR-IGAAPVDPQQQFQYTLQTKGR 241
Query: 234 VSTVEDLESLVVKAEK-GTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANP 292
+ E+ ++++A G+ + D+A+V L + N + + + AI AP AN
Sbjct: 242 LKDPEEFGRVMIRANPDGSKVIVSDVARVELGSQTYDAQGKLNNKPSAIIAIYQAPDANA 301
Query: 293 INIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFL 352
+ +AK + + L P ++E VLYD+T + SI EV++T+ + +V+ V+ +FL
Sbjct: 302 LEVAKAIKAEMDTLASRFPDDLEYKVLYDTTEFVETSITEVVQTLFISVALVVFVVYIFL 361
Query: 353 GSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRH 412
R+ L+P + IP+SLIG + G S N ++L A++LAIG+VVDDAIVV+ENV R
Sbjct: 362 QDARSTLVPGIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENVTRL 421
Query: 413 IK-EGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVF 471
++ EG SP A +E+ PVIA TL L AV+AP A+M GITG ++ +F++T+ SV
Sbjct: 422 MEDEGLSPTEATSKAMKEVTGPVIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISVL 481
Query: 472 VSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLL----DRMTARYERMLTAVMAHRPVV 527
+S + ALTLSP +C+ +LK P K HHL +R T Y +++++++ +V
Sbjct: 482 ISSVNALTLSPALCASLLKP---PKKHTHGFHHLFNTYFERFTGGYMKLVSSLVRKLVLV 538
Query: 528 -IAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSD 586
+A+A ++ + + K +PS P EDK M+ P A+L+ M ++ K+ +
Sbjct: 539 GVAYACLIGVT-GGIAKVLPSGFVPMEDKKAFMVDIQLPDGASLNRTEEVMRNLVKLTQE 597
Query: 587 QPEVQFA------QVFTGVPNSNQAFGIASMVPWSQREAS---QATVTNRVGTLVQDIPG 637
+P V+ + TG +SN I ++ W +R++ +A + ++ P
Sbjct: 598 EPGVENVIHASGFSILTGSVSSNGGLMIVTLSTWEERDSPDMVEAAIVAKLQAKYAANPS 657
Query: 638 MAVTAFQMPELPGAGSGLPIQFVI--TTPSNFESLFTIATDVLTEVKANPMFVYSDLDLN 695
+ AF +P +PG GS +FV+ T + + L ++ ++ + P + +
Sbjct: 658 VKAMAFSLPPIPGVGSVGGFEFVLQDTQGRSPQELASVMRALIMKANGQPEIAMAFSNFR 717
Query: 696 FDSATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRL 755
D M +++D+DKA A G+++ +I T+ TM+ YVN + G+ + VI Q E ++R
Sbjct: 718 ADVPQMYVDVDRDKAKALGISLNEIFSTMQTMLGSMYVNDFNRFGKVFRVILQAEGEFRN 777
Query: 756 NPESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAI 815
+ + + S+YVR+A G+++PL +LV + + P + +N +S T+ PAPG + GDAI
Sbjct: 778 SDKDIASFYVRSASGEMVPLSTLVKVTPILGPDVMNAYNMFSSTTINGFPAPGFSSGDAI 837
Query: 816 NWFENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLV 875
E A LP GY ++ G+ Q + G+ F LAL +L L Q+ES P
Sbjct: 838 AAMERAAQETLPAGYKFEWTGQTYQEIKAGNLAPLIFALALVFTYLFLVAQYESWSIPFA 897
Query: 876 IMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSR 935
+M++VP+AI GA + + + +N+Y+Q+GL+ L+GL K+ ILI E AK+ + K S
Sbjct: 898 VMLAVPIAILGAFLNILLVGSELNLYAQIGLVLLIGLACKNAILIVEFAKQLREEGK-SI 956
Query: 936 IEAVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLF 995
++A AA++R R +LMT + + G++PL+ ATGAGA R ++G + G+ TL
Sbjct: 957 LDAAETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMMAATLVGTL 1016
Query: 996 VLPVIY 1001
++PV Y
Sbjct: 1017 LVPVFY 1022
Score = 67.0 bits (162), Expect = 7e-15
Identities = 107/533 (20%), Positives = 209/533 (39%), Gaps = 69/533 (12%)
Query: 516 MLTAVMAHRPVVIAFAFIV--------FASLPMLFKFIPSELAPSEDKGVIMLMGTGPSN 567
M++ HRP FAF++ S+P+L E+AP + + + T S
Sbjct: 1 MISEFFIHRP---KFAFVISTVLTLVGLISIPILSVAEFPEIAPPQ-----VSVSTSYSG 52
Query: 568 ANLDYLANTMD-----DVNKILSDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQA 622
A+ D + +T+ +VN + +Q G + N F + + + +Q
Sbjct: 53 ASADIVKDTIAQPIEAEVNGV-EGMLYMQSKSANDGSYSLNVTFDVGT-----DADMAQV 106
Query: 623 TVTNRVGTLVQDIP------GMAVTAFQMPELPGAGSGLPIQFVITTPSNFESLF----- 671
V NRV + +P G+ V Q P + L + +++ F+SLF
Sbjct: 107 KVQNRVQQAMPRLPEEVKRQGVKVEK-QSPNI------LMVVNLVSPNETFDSLFITNYA 159
Query: 672 --TIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDKAGAYGVTMQDIGITLSTMMA 729
+ + + + + V LD ++I +D ++ ++GVT D+ L
Sbjct: 160 GLNVKDALARQNGVSKVQVIGALDY-----AIRIWLDPNQMASFGVTASDVIAALREQNI 214
Query: 730 DGYVNRIDLNGRSYEVIPQVERKWRL-------NPESMNSYYVRA-ADGKVIPLGSLVTI 781
RI + V PQ + ++ L +PE +RA DG + + + +
Sbjct: 215 QVAAGRIG----AAPVDPQQQFQYTLQTKGRLKDPEEFGRVMIRANPDGSKVIVSDVARV 270
Query: 782 DVVAEPRSLP-HFNQLNSATVGAVPAPGT---AMGDAINWFENLASSKLPKGYSHDYMGE 837
++ ++ N SA + AP + AI + +S+ P + + +
Sbjct: 271 ELGSQTYDAQGKLNNKPSAIIAIYQAPDANALEVAKAIKAEMDTLASRFPDDLEYKVLYD 330
Query: 838 ARQYV-TEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALIALAWGTA 896
++V T + + T +++A++ V+ I + R LV +++P+++ G L
Sbjct: 331 TTEFVETSITEVVQTLFISVALVVFVVYIFLQDARSTLVPGIAIPVSLIGTFAFLLAFGM 390
Query: 897 TMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVRLRPILMTTAA 956
++N S LI +G++ I++ E LS EA A K P++ TT
Sbjct: 391 SINTVSLFALILAIGIVVDDAIVVVENVTRLMEDEGLSPTEATSKAMKEVTGPVIATTLV 450
Query: 957 MIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEKHK 1009
++A P G + I + I ++ L + P + + L + K
Sbjct: 451 LLAVFAPTAVMPGITGQMYAQFSVTICISVLISSVNALTLSPALCASLLKPPK 503