Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., hypothetical multidrug resistance protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  875 bits (2262), Expect = 0.0
 Identities = 437/623 (70%), Positives = 531/623 (85%)

Query: 1   MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
           MRFTD+FI+RPVLA SISFL++LLG  A+  MQVREYP+MTNTV+TVST YYGA A+LIQ
Sbjct: 1   MRFTDIFIRRPVLAASISFLLLLLGFNALNSMQVREYPKMTNTVVTVSTSYYGADANLIQ 60

Query: 61  GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
           GFITQPLEQA+AQADN+DFMTS+S LG S I+V MKLNTDPN AL+D+LAK NSVRSQLP
Sbjct: 61  GFITQPLEQALAQADNVDFMTSESFLGTSKISVYMKLNTDPNGALADILAKVNSVRSQLP 120

Query: 121 KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
           KEAEDP+V MSTGS T+VLYI F S+++ SSQ+TDYLERVV PQL+ ++GV+ ++LYGG+
Sbjct: 121 KEAEDPSVEMSTGSQTSVLYISFFSDQINSSQLTDYLERVVKPQLFTIDGVAKVNLYGGI 180

Query: 181 KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
           KYA+R+WLDPA+M A NLSA+DVM +L ANNYQSA GQ    + L+NG+ADTQV+T+E+L
Sbjct: 181 KYAMRIWLDPARMGAFNLSASDVMQVLQANNYQSAVGQTNSVYTLFNGTADTQVATIEEL 240

Query: 241 ESLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVL 300
           + LV+ ++ G V RLGDIA V+L KSHD YRA ANG+EAVV  ++  P+ANP+ +A D  
Sbjct: 241 KRLVIGSKDGLVVRLGDIADVSLEKSHDIYRALANGKEAVVIGLDVTPTANPLTVAADTR 300

Query: 301 EMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLI 360
            +LPE+++N+P +IE ++LYDS++AI+ESI EV+KTI EAA+IV+VVITLFLGSLRAV+I
Sbjct: 301 ALLPEIERNLPPSIESSILYDSSLAIDESIKEVVKTIGEAAIIVIVVITLFLGSLRAVVI 360

Query: 361 PIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPF 420
           PIVTIPLSLIGVA++MQM GF+ NLMTLLAMVLAIGLVVDDAIVV+ENVDRHIK GESPF
Sbjct: 361 PIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVLAIGLVVDDAIVVVENVDRHIKLGESPF 420

Query: 421 RAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480
           RAAIIGTREIA+PVI+MT+TL AVYAPIALMGGITGSLFKEFALTLAGSVF+SGIVALTL
Sbjct: 421 RAAIIGTREIAVPVISMTITLAAVYAPIALMGGITGSLFKEFALTLAGSVFISGIVALTL 480

Query: 481 SPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLPM 540
           SPMMC+K+LK +  PN+FE+ V + L  +T RY  ML AVM HRPV++AFA IVFASLP+
Sbjct: 481 SPMMCAKILKPHTTPNRFEMGVENFLTGLTRRYSNMLDAVMLHRPVIVAFAIIVFASLPV 540

Query: 541 LFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGVP 600
           LFKFIPSELAP+EDKGV+M+MGT PS ANLDY+   M  V  ++  QPE   +  F GVP
Sbjct: 541 LFKFIPSELAPNEDKGVVMMMGTAPSTANLDYIQANMGLVTDMIKAQPESAASLAFVGVP 600

Query: 601 NSNQAFGIASMVPWSQREASQAT 623
           +S+QAFGIA +VPWS+R+ S  T
Sbjct: 601 SSSQAFGIAPLVPWSERDKSPKT 623



 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 59/318 (18%), Positives = 129/318 (40%), Gaps = 19/318 (5%)

Query: 701  MKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESM 760
            M+I +D  + GA+ ++  D+   +  + A+ Y + +      Y +            E +
Sbjct: 184  MRIWLDPARMGAFNLSASDV---MQVLQANNYQSAVGQTNSVYTLFNGTADTQVATIEEL 240

Query: 761  NSYYVRAADGKVIPLGSLVTIDVVAEP---RSLPHFNQLNSATVGAVPA--PGTAMGDAI 815
                + + DG V+ LG +  + +       R+L +  +     +   P   P T   D  
Sbjct: 241  KRLVIGSKDGLVVRLGDIADVSLEKSHDIYRALANGKEAVVIGLDVTPTANPLTVAADTR 300

Query: 816  NWFENLASSKLPKGYSHDYMGEARQYVTEG-SALYATFGLALAIIFLVLAIQFESLRDPL 874
                 +  + LP       + ++   + E    +  T G A  I+ +V+ +   SLR  +
Sbjct: 301  ALLPEIERN-LPPSIESSILYDSSLAIDESIKEVVKTIGEAAIIVIVVITLFLGSLRAVV 359

Query: 875  VIMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLS 934
            + +V++PL++ G  I +     T+N+ + + ++  +GL+    I++ E       H KL 
Sbjct: 360  IPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVLAIGLVVDDAIVVVE---NVDRHIKLG 416

Query: 935  RIEAVMHAAKVRLR----PILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGT 990
              E+   AA +  R    P++  T  + A   P+    G   +      + +   + I  
Sbjct: 417  --ESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMGGITGSLFKEFALTLAGSVFISG 474

Query: 991  LFTLFVLPVIYSYLAEKH 1008
            +  L + P++ + + + H
Sbjct: 475  IVALTLSPMMCAKILKPH 492