Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1023 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  550 bits (1418), Expect = e-160
 Identities = 350/1020 (34%), Positives = 551/1020 (54%), Gaps = 24/1020 (2%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            MR  +V I+ P+ A  +S + VLLGL A  K+ ++ +PE T    +V+    GASAD + 
Sbjct: 1    MRLPEVCIRHPIFASVLSIMAVLLGLIAFQKLDIQYFPEHTTHSASVNASIAGASADFMS 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPN----AALSDVLAKTNSVR 116
              +   L  A +  D +D M++    GR ++T+  K N D +      L + L  +    
Sbjct: 61   SNVADKLIAAASGIDKVDTMSTDCSEGRCSLTI--KFNDDTSDIEYTNLMNKLRSSIEGI 118

Query: 117  SQLPKEAED-PTVTMSTGSTTAVLYI--GFTSNELASSQITDYLERVVNPQLYAVNGVSS 173
            +  P+   D PTVT  T +T +   I     S  +    + DY+ + + PQL  V GV +
Sbjct: 119  NDFPQSMIDKPTVTDDTSATDSASNIITFVNSGGMEKQAMYDYISQQLVPQLKQVQGVGA 178

Query: 174  I-DLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232
            +   YGG + A+RVWL+P +M ALN+ AADV+  L + N    +G   G+   ++ +   
Sbjct: 179  VWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSINPLN 238

Query: 233  QVSTVEDLESLVVKAEKGTVTRLGDIAKVTLAK-SHDTYRASANGREAVVAAINAAPSAN 291
            QV T+ED++ LV+K  +G + R+ D+A+V + + S      S +   A+   I    +AN
Sbjct: 239  QVETLEDVKDLVIKVSEGKIIRIADVAQVVMGEESLSPSMLSISRHSAMSLQILPLSNAN 298

Query: 292  PINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLF 351
            P+ +A ++   +  +QK++P  +EM++ Y+    I  +IHE    ++EA ++V +++ LF
Sbjct: 299  PVKVASNIKAEIARMQKHLPQGLEMHLAYNQADFIEAAIHEGFAALIEAVILVSLIVVLF 358

Query: 352  LGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDR 411
            LGSLRA  IPI+TIP+ ++GV  VM  +GFS N++T+LA++LAIGLVVDDAIVV+EN  R
Sbjct: 359  LGSLRAASIPIITIPVCVVGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENCYR 418

Query: 412  HIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVF 471
            HI+ GE+PF AAI G +EI  P+IAMTLTL AVY PI LM G+T  LF++F+ TLA +V 
Sbjct: 419  HIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVM 478

Query: 472  VSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFA 531
            +SG+VALTLSPMM + ++   E   ++  +V   L ++   Y   L      + ++   A
Sbjct: 479  ISGVVALTLSPMMSAYLINTTEQHPRWFSRVEVQLQQLNHLYINELNKWFVRKRLMFGVA 538

Query: 532  FIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQ 591
             ++     + +  +P  L P+ED G I +   GP+     Y  +   ++N ++   P V 
Sbjct: 539  VVLVGLAGIAYWQLPKILLPAEDSGFIDVTANGPTGVGRQYHLDHNRELNSVIDGHPAVG 598

Query: 592  FAQVFTGVPNSNQAFGIASMVPWSQR-EASQATVTNRVGTLVQDIPGMAVTAFQMPELPG 650
                +       +      + PW +R E     + + +    Q +    + +F +     
Sbjct: 599  ANLSYI----EGEPINHVLLKPWGERSEGIDEVIEDLIAKSKQSVSAYNM-SFSIRSADN 653

Query: 651  AGSGLPIQFVITT-PSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKDK 709
                  ++  +TT   N + L   A  V   ++  P        +  D     ++ID++ 
Sbjct: 654  LNIANNLRLELTTLDRNKDELSQTAAKVQKLLEDYPGLTNVGNSVLRDQLRYDLSIDRNA 713

Query: 710  AGAYGVTMQDIGITLSTMMADGYVNRIDL---NGRSYEVIPQVERKWRLNPESMNSYYVR 766
                GV+  D+   LST +  G V   DL   +G +Y +  QV      + + +N  YV 
Sbjct: 714  IILSGVSYGDVTNALSTFL--GSVKAADLHATDGFTYPIQVQVNLDKLSDFKVLNKLYVT 771

Query: 767  AADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKL 826
            +  G+ +PL   V+I       ++  F  L+SA + A   PG +  +   + +    S L
Sbjct: 772  SESGQALPLSQFVSIKQTTAESNIKTFMGLDSAELTADLMPGYSTDEIKAYLDEQLPSLL 831

Query: 827  PKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICG 886
                   Y G  ++ +   +   + F LAL  I+L+LA QFES  DPL+I+++VPL I G
Sbjct: 832  NDAQGFKYNGVVKELMDSQAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVG 891

Query: 887  ALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEAVMHAAKVR 946
            AL+ LA    ++NIYSQ+GL+TLVGL+TKHGIL+ E A ++Q    +S IEA + +AK R
Sbjct: 892  ALLTLAVFGQSINIYSQIGLLTLVGLVTKHGILLVEFANKQQAQG-MSAIEAALSSAKWR 950

Query: 947  LRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAE 1006
            LRPILMT+  MI   IPL  ATG G+    +IG+V+V GL  GT F+LFV+PV Y  ++E
Sbjct: 951  LRPILMTSLTMILSAIPLALATGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMSE 1010