Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1031 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  651 bits (1680), Expect = 0.0
 Identities = 378/1019 (37%), Positives = 596/1019 (58%), Gaps = 22/1019 (2%)

Query: 1    MRFTDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQ 60
            M  TD+ +KRPV A  IS L+V  GL A  K+ +REYP +   ++++ T Y GASA +++
Sbjct: 1    MILTDLSVKRPVFASVISLLLVAFGLVAFGKLPLREYPNIDPPIVSIETNYRGASAAVVE 60

Query: 61   GFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLP 120
              ITQ +E  ++  + I  ++S S  GRS +T+   ++ +   A +DV  + + +   LP
Sbjct: 61   SRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISGLLDNLP 120

Query: 121  KEAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGM 180
            +EA+ P V  + G    ++++   S+++ + ++TDY  R +  +L  V+GVS I + GG 
Sbjct: 121  EEADPPEVQKANGGDEVIMWLNLESDQMTTLELTDYTRRYLADRLSVVDGVSMIRIGGGK 180

Query: 181  KYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDL 240
             YA+RVWLD   +A+ +L+ ADV + L A N +   G    +   +    +    + ED 
Sbjct: 181  VYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLERSYRSAEDF 240

Query: 241  ESLV-VKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDV 299
             +LV V+ E G + +LGD+A+V +    D      N    +   ++   +AN + +A+ V
Sbjct: 241  ANLVIVQGEDGYLVKLGDVARVEVGSDEDRIMFRGNRESMIGLGVSKQSTANTLEVARGV 300

Query: 300  LEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVL 359
              ++ ++   +P+ + +   YDS+V I  SI EV +T+  A ++V++VI LFLGS+RA+L
Sbjct: 301  NALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLGSVRAML 360

Query: 360  IPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESP 419
            IP +T+P+SL+G  +V+  +G++ NL+TLLAM+LAIG+VVDDAIV+LEN+ R I+EG+SP
Sbjct: 361  IPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGDSP 420

Query: 420  FRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALT 479
             +AA +G RE+A  VIA TL L AV+ PI  + G  G LFKEFA+ ++ +V  S IVALT
Sbjct: 421  LKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVIFSSIVALT 480

Query: 480  LSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIAFAFIVFASLP 539
            LSPMMC+K+LK  E  +    KV  ++  ++ RY+  L   M    +++    I   S  
Sbjct: 481  LSPMMCAKLLKPAEQDSWLVRKVDSIMTGISRRYQSSLEGAMTKPVLMLVIVLIALGSSV 540

Query: 540  MLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEVQFAQVFTGV 599
             L + +P E AP ED+G + LM  GP  A+ +Y+ + M +V   L   P V    +   +
Sbjct: 541  FLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEYIESYMTEVESRL--MPLVDSGDIKRLL 598

Query: 600  PNSNQAFGIAS----------MVPWSQREASQATVTNRVGTLVQDIPGMAVTAFQ-MPEL 648
              + + FG A+          +  W QR   +  + + +   + D+ G  V AF  M + 
Sbjct: 599  IRAPRGFGRAADFSNGMAIIVLEDWGQRRPMKEVIGD-INKRLADLAG--VQAFPVMRQA 655

Query: 649  PGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATMKINIDKD 708
             G G G P+QFVI  PS +E L      ++ +V  NP  +  D D       +++ ID+D
Sbjct: 656  FGRGVGKPVQFVIGGPS-YEELAAWRDIMMQKVAENPKLLGLDHDYKETKPQLRVVIDRD 714

Query: 709  KAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNSYYVRAA 768
            +A + GV++ +IG TL +M+    V     +G  Y+VI + ER  +     + + YVR+ 
Sbjct: 715  RAASLGVSISNIGRTLESMLGSRLVTTFMRDGEEYDVIVEGERSNQNTAADLQNIYVRSE 774

Query: 769  DGK-VIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENLASSKLP 827
              K +IPL +LVT++  A+  SL  +N++ + T+ A  A G ++G+A+++   +A + LP
Sbjct: 775  RTKELIPLSNLVTVEEFADASSLNRYNRMRAITIEASLADGYSLGEALDYLNQVARANLP 834

Query: 828  KGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGA 887
                  Y G++  Y   GS++Y  F LAL I+FLVLA QFES   P+VIM++VPLA  GA
Sbjct: 835  AEAVISYKGQSLDYQESGSSMYFVFLLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGA 894

Query: 888  LIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNK-LSRIEAVMHAAKVR 946
            L+ L +   ++NIYSQ+G+I LVGL  K+GILI E A   QL +K +    A++ A+  R
Sbjct: 895  LLGLWFTGQSLNIYSQIGIIMLVGLAAKNGILIVEFA--NQLRDKGVDFDRAIIQASCQR 952

Query: 947  LRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLA 1005
            LRPILMT     AG +PL+ ATGAGA  RF IG+V+++G+ + TLFT++V+P  Y   A
Sbjct: 953  LRPILMTGITTAAGAVPLVLATGAGAETRFVIGVVVLAGIMLATLFTIYVIPTAYGLFA 1011