Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1036 a.a., multidrug efflux RND transporter permease subunit from Klebsiella michiganensis M5al

 Score =  509 bits (1310), Expect = e-148
 Identities = 326/1023 (31%), Positives = 535/1023 (52%), Gaps = 31/1023 (3%)

Query: 7    FIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFITQP 66
            FI RPV A  ++ ++++ G  AI ++ + +YP +    + +S  Y GA A  +Q  +TQ 
Sbjct: 5    FIHRPVFAWVLAIIMMIAGGLAIMQLPIAQYPTIAPPAVAISATYPGADAQTVQDTVTQV 64

Query: 67   LEQAVAQADNIDFMTSQS-VLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAED 125
            +EQ +   DN+ +M+S S   G  TIT+T    TDP+ A   V  K       LP+E + 
Sbjct: 65   IEQNMNGIDNLMYMSSTSDSAGGVTITLTFTSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124

Query: 126  PTVTMSTGSTTAVLYIGFTSNELASSQ--ITDYLERVVNPQLYAVNGVSSIDLYGGMKYA 183
              +++   S++ ++  GF S+  +++Q  I+DY+   V   +  +NGV  + L+G  +YA
Sbjct: 125  QGISVEKSSSSFLMVAGFISDNASTTQDDISDYVASNVKDTISRLNGVGDVQLFGA-QYA 183

Query: 184  LRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVL----YNGSADTQVSTVED 239
            +RVWLD   +   NL+  DV++ L   N Q A GQ  G   L     N S   Q    + 
Sbjct: 184  MRVWLDGNLLNKYNLTPVDVINQLQIQNDQIAAGQLGGTPALKGQQLNASIIAQTRLKDP 243

Query: 240  LE----SLVVKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINI 295
             E    +L V A+ G+V  L D+A++ L   +    A  NG+ A    I  A  AN ++ 
Sbjct: 244  AEFGKVTLRVNAD-GSVVHLKDVARIELGGENYNVVAKINGKPASGLGIKLATGANALDT 302

Query: 296  AKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSL 355
            A  +   L ELQ   P  +++   YD+T  +  SIHEV+KT+ EA ++V +V+ LFL ++
Sbjct: 303  AAAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNI 362

Query: 356  RAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDR-HIK 414
            RA LIP + +P+ L+G   V+   G+S N +T+  MVLAIGL+VDDAIVV+ENV+R  ++
Sbjct: 363  RATLIPTIAVPVVLLGTFAVLATFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMVE 422

Query: 415  EGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSG 474
            E   P  A      +I   ++ + + L AV+ P+A  GG TG+++++F++T+  ++ +S 
Sbjct: 423  EKLPPKEATEKSMAQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSV 482

Query: 475  IVALTLSPMMCSKMLKANEAPNK----FELKVHHLLDRMTARYERMLTAVMAHRPVVIAF 530
            +VAL L+P +C+ +LK   A +     F    +   DR  + Y   ++ ++      +  
Sbjct: 483  LVALILTPALCATLLKPASADHHEKKGFFGWFNAKFDRSVSHYTNSVSGILRCTGRYLII 542

Query: 531  AFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPEV 590
              ++   + +LF  +P+   P ED+GV M M   PS A  +     +D V      + + 
Sbjct: 543  YLLIVVGMAVLFVRLPTSFLPDEDQGVFMTMIQLPSGATQERTQKVLDTVTDYYLHKEKA 602

Query: 591  QFAQVFT------GVPNSNQAFGIASMVPWSQREASQ---ATVTNRVGTLVQDIPGMAVT 641
                VFT           N      S+ PW +R  S+     +  R       I    V 
Sbjct: 603  NVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERSGSENGVEAIIKRATAAFSQIKDAMVF 662

Query: 642  AFQMPELPGAGSGLPIQFVITTPSNF--ESLFTIATDVLTEVKANP-MFVYSDLDLNFDS 698
             F +P +   G+     F +    N    +L      +L  V+ +P   V    +   D+
Sbjct: 663  PFNLPAIIELGTATGFDFELIDQGNLGHSALTQARNQLLGMVREHPDQLVRVRPNGLEDT 722

Query: 699  ATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPE 758
               K+++D++KA A G+++ DI  T+S  +   YVN    +GR  +V  Q + K+R+ P 
Sbjct: 723  PQFKLDVDQEKAQALGISLSDINETISAALGGYYVNDFIDHGRVKKVYVQADAKFRMLPS 782

Query: 759  SMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWF 818
             +N+ YVR+A+G+++P  + VT   V     L  +N L S  +    APG + GDA+   
Sbjct: 783  DINNMYVRSANGEMVPFSAFVTSRWVYGSPRLERYNGLPSMEMLGEAAPGKSTGDAMILM 842

Query: 819  ENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMV 878
            E LAS KLP G  +D+ G + Q    G+   A + ++L ++FL LA  +ES   P  +M+
Sbjct: 843  EQLAS-KLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVML 901

Query: 879  SVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIEA 938
             VPL + GAL+A +      ++Y QVGL+T +GL  K+ ILI E AK+         IEA
Sbjct: 902  VVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGIIEA 961

Query: 939  VMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLP 998
             + A+++RLRPILMT+ A I G++PL+ + GAG+  + ++G  ++ G+ + TL  +F +P
Sbjct: 962  TLEASRMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMLMATLLAIFFVP 1021

Query: 999  VIY 1001
            V +
Sbjct: 1022 VFF 1024



 Score = 61.2 bits (147), Expect = 4e-13
 Identities = 55/250 (22%), Positives = 112/250 (44%), Gaps = 21/250 (8%)

Query: 768  ADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTA--MGDAINWFENLASSK 825
            ADG V+ L  +  I++  E     ++N +  A +   PA G    +    N  +  A+ K
Sbjct: 255  ADGSVVHLKDVARIELGGE-----NYNVV--AKINGKPASGLGIKLATGANALDTAAAIK 307

Query: 826  ---------LPKGYSHDYMGEARQYVTEG-SALYATFGLALAIIFLVLAIQFESLRDPLV 875
                      P+G    Y  +   +V      +  T   A+ ++FLV+ +  +++R  L+
Sbjct: 308  AKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNIRATLI 367

Query: 876  IMVSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSR 935
              ++VP+ + G    LA    ++N  +  G++  +GL+    I++ E  +   +  KL  
Sbjct: 368  PTIAVPVVLLGTFAVLATFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMVEEKLPP 427

Query: 936  IEAVMHAAKVRLRPILMTTAAMIAGL-IPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTL 994
             EA    +  +++  L+  A +++ + +P+ +  G+  A      I IVS +A+  L  L
Sbjct: 428  KEAT-EKSMAQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL 486

Query: 995  FVLPVIYSYL 1004
             + P + + L
Sbjct: 487  ILTPALCATL 496