Pairwise Alignments

Query, 1036 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1065 a.a., multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  522 bits (1345), Expect = e-152
 Identities = 334/1055 (31%), Positives = 546/1055 (51%), Gaps = 37/1055 (3%)

Query: 7    FIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFITQP 66
            FI+RPVL+  IS  IV++G+  +F + V +YP++    I VST YYGASA+ +Q  +  P
Sbjct: 6    FIERPVLSAVISITIVVVGIIGLFSLPVEQYPDIAPPTIMVSTTYYGASAETLQKSVIAP 65

Query: 67   LEQAVAQADNIDFMTSQSV-LGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAED 125
            LE+A+   +++ +MTS +   G  +ITV  K  TDP+ A  +V  + +    QLP E   
Sbjct: 66   LEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSRATGQLPAEVTQ 125

Query: 126  PTVTMSTGSTTAVLYIGFTSNELASSQ--ITDYLERVVNPQLYAVNGVSSIDLYGGMKYA 183
              VT S   T+ +     +S + +  +  +++Y+   + PQ+  ++GV  + + GG +Y+
Sbjct: 126  VGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVGDLMIMGG-EYS 184

Query: 184  LRVWLDPAKMAALNLSAADVMSILNANNYQSATG---QAIGEFVLYNGSADTQVSTVEDL 240
            +RVW+ P  MA   L  +D+  +L   N +SATG   +   E   Y      ++ T E+ 
Sbjct: 185  MRVWMKPDVMAQYKLIPSDITGVLAEQNIESATGSFGENSNETYQYTMKYKGRLITPEEF 244

Query: 241  ESLVVKA-EKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDV 299
              +V+++ + G V +L DIA+V L +    Y    +G   V   +     +N   + +++
Sbjct: 245  GDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEVNQNI 304

Query: 300  LEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVL 359
             E+L E++K++P  +E+  +  S   +  SIHEV+KT++EA ++V++V+ +FL   R+ L
Sbjct: 305  DELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDFRSTL 364

Query: 360  IPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEG-ES 418
            IP+V + +SLIG    M + GFS NL+TL A+VL IG VVDDAI+V+E V      G  S
Sbjct: 365  IPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDVGYRS 424

Query: 419  PFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVAL 478
             + A+I   + I+  VI  +L   AV+ P++ MGG +G+ + +F LT+A +V +S I AL
Sbjct: 425  SYMASIDAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISAINAL 484

Query: 479  TLSPMMCSKMLK---------ANEAPNKFELKVHHLLDRMTARYERMLTAVMAHRPVVIA 529
            TLSP +C+ +LK          N     F    +   D +  +Y+ ++   +  R +  +
Sbjct: 485  TLSPALCALLLKPYINEDGTQKNNFAASFRKAFNSAFDILIEKYKNVVLIFIKRRWLAWS 544

Query: 530  FAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKILSDQPE 589
                    L  L     + L P ED+GV+ +  +  + ++L      M+ + K L D P+
Sbjct: 545  LLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNVSTAAGSSLTTTDEVMERIEKRLMDIPQ 604

Query: 590  VQFAQVFTG---VPNSNQAFG--IASMVPWSQREASQATVTNRVGTL---VQDIPGMAVT 641
            ++  Q   G   +     +FG  I  + PW +R   +  V   +G +     DI   +V 
Sbjct: 605  IKHVQKVAGYGLLAGQGSSFGMLILKLKPWDERPNDEDNVQAVIGQVYGRTADIKDASVF 664

Query: 642  AFQMPELPGAGSG--LPIQFVITTPSNFESLFTIATDVLTEVKANP--MFVYSDLDLNFD 697
            A     +PG G G  L +        +    FT     L  +   P     YS  D+ + 
Sbjct: 665  AISPGMIPGYGMGNALELHMQDKMGGDINEFFTTTQQYLGVLNQRPEIAMAYSTFDVRYP 724

Query: 698  SATMKINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNP 757
              T  + +D  K    G+T   +  TLS      YV+  +   + Y V+ Q + ++RL+ 
Sbjct: 725  QWT--VEVDAAKCKRAGITPDAVLSTLSGYYGGQYVSNFNRFSKVYRVMIQADPQFRLDE 782

Query: 758  ESMNSYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINW 817
             S+++ +VR ++G++ PL   VT+       SL  FN  NS  V A+PA G + GDAI  
Sbjct: 783  TSLDNAFVRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKA 842

Query: 818  FENLASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIM 877
             +  A   LPKGY +DY G  R+   +       FG+   +I+L+L+  +ES   P  ++
Sbjct: 843  VQETAVQSLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALYESFIIPFAVL 902

Query: 878  VSVPLAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIE 937
            +SVP  + G+ +         NIY Q GLI L+GL+ K  IL+ E A E +    +  I 
Sbjct: 903  LSVPCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLTEYAAERRKAG-MGLIA 961

Query: 938  AVMHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVL 997
            + + AAK RLRPILMT   MI GL PLM ++G GA    S+G  +V G+ IGTL  LF++
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 998  P---VIYSYLAEKHKPLPVF-VEDKDLEKLARIDE 1028
            P   + + +L E+ +P+     ED  +E+  ++ E
Sbjct: 1022 PTLFIAFQWLQERLRPVQSRPTEDWQIEEEIKVSE 1056