Pairwise Alignments

Query, 298 a.a., HTH-type transcriptional activator IlvY from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.7 bits (213), Expect = 6e-22
 Identities = 69/271 (25%), Positives = 131/271 (48%), Gaps = 21/271 (7%)

Query: 3   IKTLQLFMHLCDCKNFSKTASAMHLSPSALSRQIQKLEQDLGHTLFLRDNRSVELTPAAH 62
           IKTLQ F+ L + +NF++ A    ++   LS+ IQ+LE+ LG TL +R+N+ VELT A  
Sbjct: 5   IKTLQCFLTLVETENFTRAAQKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQAGQ 64

Query: 63  QLLPVAARIIHDWRQFTTELNDDSQELRGEIKL-FCSVTASYSHLPELLSSFRLKHPYIE 121
                A  I+  W +   ++++ S    G ++L  C + +S   +  LL+S+R ++P +E
Sbjct: 65  LFEHSAREILGQWHRLQEDMSNLSGLKSGRLRLGVCPMMSSL--IIGLLTSYRKRYPGVE 122

Query: 122 FKLLTGDPAQAIDKILHDEADIAISAMPEQLPSRIEFATISEIPLSVIA----PLGISSF 177
            ++           +L++  DIA +A+P    + +    +++ PL        PL   S+
Sbjct: 123 LQMYEYGGFGCEQALLNNSLDIAFTALPTTHETELINQPLTKYPLLACLPEAHPLAAKSY 182

Query: 178 MDELQKEQPDWNEIPFIV-PESGTARDRANTWFKQMKIKPNIYAQIAGHEAIVSLVALGC 236
           +        D+   PFI+  E  +     N   ++  ++ NI  +    + + ++V    
Sbjct: 183 L-----SWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLATMVEADM 237

Query: 237 GVGIAPDVVINNSPVRDKI--QRLSVTPIKP 265
           G+ I P+      P+  K+   +L   P++P
Sbjct: 238 GLAILPE------PICQKLSNSKLVFRPMQP 262