Pairwise Alignments

Query, 611 a.a., vitamin B12 transporter BtuB from Vibrio cholerae E7946 ATCC 55056

Subject, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.7 bits (195), Expect = 5e-19
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 26/209 (12%)

Query: 22  ANEAQPQETVVVTANRFEQKASSTLADVEIITRQDIEQTQAKTLPELLRRLTGVQITQ-- 79
           A +A   E + VT +R ++    T + V +I+R +I+ +   T+ + +R L+        
Sbjct: 34  AVDANKVERIAVTGSRIQRTDMETSSPVTVISRAEIDASGTATVSDFVRNLSQNSFGSFR 93

Query: 80  -----NGGRGQLASLFVRGTSSDQVLVLVDGIRFARAAK---GAVDFNQIPLTYVDRIEY 131
                  G+   +++ +RG  S + LVL+DG R   +     G  + N +P+  ++RIE 
Sbjct: 94  EASGFGSGQSSQSTVSMRGLGSQRTLVLIDGRRMGSSVAFGGGTQNLNVVPMAAIERIEV 153

Query: 132 VRGARASLYGSEAIGGVINIITKARSQQQGTTVSAGLGSLDYQELSIASGVAIGEKGQMN 191
           +R   +++YGS+A+ GVINIITK   + +G    A LG+  +            EK    
Sbjct: 154 LRDGASAVYGSDAVAGVINIITK--KEFEGVEFDADLGATQH---------GGAEKSNAR 202

Query: 192 VALGTESDKGYNVRPVPGVN-----DGDR 215
              G  S+K   V  V   N     D DR
Sbjct: 203 FTFGVNSEKTNMVASVEYYNRAALYDADR 231



 Score = 64.3 bits (155), Expect = 2e-14
 Identities = 75/316 (23%), Positives = 127/316 (40%), Gaps = 80/316 (25%)

Query: 369 LEASLRFDDNQEYGSQTTHNIALGYQFIPEFGVKASYGSAFKAP---NLY---------- 415
           LE S RFDD  ++GS     + L Y+ +    V+ASYG+ F+AP   +LY          
Sbjct: 575 LELSARFDDYSDFGSTFNPKVGLSYRPVDSLLVRASYGTGFRAPTFDDLYATASETYLWA 634

Query: 416 ---------------QQYDPSY-GNVNLQPEDADSAELSF-YGLFSGIKWSITGYDYKIN 458
                          +Q+   Y GN +L+PE++ S  L   + +   + + ++ YD +I+
Sbjct: 635 RDWTQCPGNPNGCVQEQFKAQYQGNDDLEPEESTSLSLGLVWNVTDALDFELSYYDIQID 694

Query: 459 NLIDYNSTTK---------NYQNVI-------------------GESNIKGVEFT----- 485
           N+I   ST           +  NV+                   GE    G++F      
Sbjct: 695 NVISTMSTQDVLNQERDGFDMSNVLFRDPVTGKIDYVVLQKMNLGELKTSGIDFNIRYLL 754

Query: 486 ----AEFATGI-VQHQLSVDLKDADDSKGKTLQRRA-EHMYKWNALVAFEQVDW--SIGY 537
                EF  G    + LS + KD   S+ + +     +  ++ N    + Q +W  S+  
Sbjct: 755 ETSVGEFRFGAETNYVLSWESKDGPYSELEDIIGDVGQPQFRANLSTTWTQGEWEASLFA 814

Query: 538 QYVGKRPDLDYNTYPTQNITLDAYSLVDTSVSYYVTDSTTISARIDNLLDKE--YETANG 595
           +Y   + D DY   P+Q        L+D    Y +  +  ++  I NLLD+E       G
Sbjct: 815 RYTDSQEDEDYGKTPSQ-------WLLDAQAGYNLPWNAKVNVGIRNLLDEEPAMNENLG 867

Query: 596 YPAAERAYYLNIGYQF 611
           +P  +   Y  IG ++
Sbjct: 868 FPGYDTYLYDPIGREY 883



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 49/207 (23%)

Query: 111 AAKGAVDFNQIPLTYVDRIEYVRGARASLYGSEAIGGVINIITKARSQQQGT-TVS---A 166
           A +GAVD N+     V+RI  V G+R      E     + +I++A     GT TVS    
Sbjct: 30  AEQGAVDANK-----VERIA-VTGSRIQRTDMET-SSPVTVISRAEIDASGTATVSDFVR 82

Query: 167 GLGSLDYQELSIASGVAIGEKGQMNVA---LGTE-------------------SDKGYNV 204
            L    +     ASG   G+  Q  V+   LG++                     +  NV
Sbjct: 83  NLSQNSFGSFREASGFGSGQSSQSTVSMRGLGSQRTLVLIDGRRMGSSVAFGGGTQNLNV 142

Query: 205 RPVPGVN------DGDRHGFRSDNALLGYVHQFDESWSLFANARAYENIYQYDNSYGTRD 258
            P+  +       DG    + SD A+ G ++            + +E + ++D   G   
Sbjct: 143 VPMAAIERIEVLRDGASAVYGSD-AVAGVIN--------IITKKEFEGV-EFDADLGATQ 192

Query: 259 YKEAEKDDLSFTIGTQYQSERWVSELQ 285
           +  AEK +  FT G   +    V+ ++
Sbjct: 193 HGGAEKSNARFTFGVNSEKTNMVASVE 219