Pairwise Alignments

Query, 611 a.a., vitamin B12 transporter BtuB from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., TonB-dependent receptor C-terminal domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 82.4 bits (202), Expect = 5e-20
 Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 13/250 (5%)

Query: 12  SLLTPISYLHANEAQPQETVVVTANRFEQKASSTLADVEIITRQDIEQTQAKTLPELLRR 71
           S++ P+           +  +V   R ++   +  A+V +I    IE + A  L ++LR 
Sbjct: 19  SIIAPVMAADDTSTAKVDEHLVVIGRSDKTPLNIAANVNVIDAAAIEMSGATNLTDVLRG 78

Query: 72  LTGVQITQNG-GRGQLASLFVRGTSSDQVLVLVDGIRFARAAKGAVDFNQIPLTYVDRIE 130
            +G+QI+ N  G       F   T+ +  L+L+DG R       A   N IPL  V+R+E
Sbjct: 79  QSGIQISDNNIGTSFAMRGFSASTAVNNTLILLDGRRLNNIDIAAPSLNAIPLNLVERVE 138

Query: 131 YVRGARASLYGSEAIGGVINIITKARSQQQGTTVSAGLGSLDYQELSIASGVAIGEKGQM 190
            + G+   LYG +A+GGVINI+TK+     G+   +G     Y+     SG AI +    
Sbjct: 139 ILSGSAGVLYGDQAVGGVINIVTKSPENTGGSVQLSGGSFNTYEGRGDVSG-AINK--DW 195

Query: 191 NVALGTESDKGYNVRPVPGVNDGDRHGFRSDNALLGYVHQFDESWSLFANARAYENIYQY 250
              L    ++G N R         +H      ++LG +     + S F     Y++  + 
Sbjct: 196 RYFLSGSYNQGDNYR---------QHNANETGSILGRIQYKTATDSFFVETSYYDDDREN 246

Query: 251 DNSYGTRDYK 260
             S     +K
Sbjct: 247 PGSLTVDQFK 256



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 14/139 (10%)

Query: 483 EFTAEFATGIVQHQLSVDLKDADDSKGKTLQRRAEHMYK-WNALVAFEQVDWSIGYQYVG 541
           + T     G+  + +  +  D  +  GK L   AEH  + + ++   E +       Y G
Sbjct: 519 QVTQALQLGLEYNYIDAEFTDGLND-GKKLSWVAEHSGRGYVSMDVAEHIQLFAEAIYTG 577

Query: 542 KRPDLDYNTYPTQNITLDAYSLVDTSVSYYVTDSTTISARIDNLLDKEYETA-------- 593
           +R     N    Q   L +Y L + +++Y   D+   S RIDNL DK+Y ++        
Sbjct: 578 ERFVEGDNA--NQGEKLASYVLGNLALNYS-RDAWLASLRIDNLFDKDYVSSGYYGGNWG 634

Query: 594 NGYPAAE-RAYYLNIGYQF 611
           +GY +   R   L +GY+F
Sbjct: 635 DGYYSGRGRDIRLTVGYRF 653