Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas stutzeri RCH2

 Score =  369 bits (948), Expect = e-107
 Identities = 186/364 (51%), Positives = 250/364 (68%), Gaps = 8/364 (2%)

Query: 6   VNPELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFN 65
           ++P  Y+ QLA+K ARL  +   +  P  EVF+SP  +YR+R EFR+W E    +Y MF 
Sbjct: 24  LDPAQYETQLAEKAARLVELLAPFDAPAPEVFDSPREHYRLRTEFRLWREDGQRHYAMFE 83

Query: 66  QETREK-YRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLY 124
           Q  + K   +D FP ASR IN+LMP L  A + S +L  KLFQV+FL+TL+G+ L++L Y
Sbjct: 84  QGDKHKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLAGDALITLAY 143

Query: 125 HRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQV 184
           HR L E W   A+ L   L      ++L+GR++  ++V+ RDYV E L V G+ + Y+Q 
Sbjct: 144 HRPLDEAWQAEAEQLAANLG-----VSLVGRSKGKRIVIGRDYVEEALVVAGRTFRYRQP 198

Query: 185 ENSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPS 244
           E +FTQPN +V +KML WA +   E   DLLELYCGNGNF+L LA    RVLATE++K S
Sbjct: 199 EGAFTQPNGEVCQKMLNWAFEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTS 258

Query: 245 VEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPR 304
           V AA  NIA   I N++++R+SAEE TQA+   R F RL D  +DL+SY   ++FVDPPR
Sbjct: 259 VNAALANIADTGIDNIELVRLSAEELTQALNEVRPFRRLAD--IDLKSYDFGSVFVDPPR 316

Query: 305 SGMDIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVM 364
           +GMD DTC++ + +ERILYISCNPETL +N+  L +TH++ R ALFDQFPYTHHME+GV+
Sbjct: 317 AGMDPDTCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMESGVL 376

Query: 365 LERK 368
           L R+
Sbjct: 377 LVRR 380