Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 81/265 (30%), Positives = 124/265 (46%), Gaps = 37/265 (13%)

Query: 115 SGEILVSLLY-HRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQ 173
           +GEIL++L+    QL E    A Q L    N  G  LNL   +   +++ D  + +    
Sbjct: 212 TGEILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNL-NPSHGNRILGDETHCLA--- 267

Query: 174 VNGQPYVYKQVEN--------SFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFS 225
             G+PY+ + +++        +F Q N + AE++L    D  + S   L +LYCG G  +
Sbjct: 268 --GRPYLIECLDDLEFAIGPETFFQVNTEQAERLLPILKDFLRGSDR-LFDLYCGVGTLT 324

Query: 226 LALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKD 285
           L LA     VL  E+   SV  AQ N   N I NV+  R  A E   A     +     D
Sbjct: 325 LPLASEVGSVLGLEILPESVVQAQQNADRNGISNVE-FRAGAVEILLA-----QIPESPD 378

Query: 286 AGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGY--ERILYISCNPETLQENLQVL--GET 341
           A           + +DPPR G +    ++++    +RI Y+SCNP TL  +LQ L  G+ 
Sbjct: 379 A-----------VLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDR 427

Query: 342 HQVVRFALFDQFPYTHHMEAGVMLE 366
           ++++     D FP T H+E   +LE
Sbjct: 428 YRLLLVQPLDFFPQTAHVETVALLE 452