Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score = 78.2 bits (191), Expect = 4e-19
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 21/194 (10%)

Query: 175 NGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQE-SKGDLLELYCGNGNFSLALAQNFE 233
           NG P   +    SF Q N +VA ++   A     E S   L +L+CG G F L  A    
Sbjct: 199 NGVPLFIRP--KSFFQTNPEVASRLYATAAKWVDELSPKSLWDLFCGVGGFGLHCANESL 256

Query: 234 RVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSY 293
            V   E+   +++ A+ + AA  + N+    + + +F    + +                
Sbjct: 257 PVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALDSTDFAMGQQAQEV-------------- 302

Query: 294 RCNTIFVDPPRSGMDIDTCKMVQ--GYERILYISCNPETLQENLQVLGETHQVVRFALFD 351
               I V+PPR G+  + C+ +   G   I+Y SCNPETL ++L ++   +++ R  LFD
Sbjct: 303 -PEVIIVNPPRRGIGEELCERLSAFGPRAIIYSSCNPETLAKDLALI-SGYRIARVQLFD 360

Query: 352 QFPYTHHMEAGVML 365
            FP++ H E   +L
Sbjct: 361 MFPHSDHFEVLCLL 374