Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Rahnella sp. WP5

 Score = 74.3 bits (181), Expect = 5e-18
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 24/187 (12%)

Query: 187 SFTQPNAKVAEKMLEWAVDCTQESKGDLL---ELYCGNGNFSLALAQNFERVLATELAKP 243
           SF Q N  VAEK+   A D  + ++GD+    +L+CG G F L  A    ++   E++  
Sbjct: 209 SFFQTNPVVAEKLYATARDWVR-ARGDIRSMWDLFCGVGGFGLHCATPQMKLTGIEISAE 267

Query: 244 SVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPP 303
           ++  A+ +     + NV+   + +  F     GK E   L              + V+PP
Sbjct: 268 AIACAKESAVRLGLQNVEFQALDSTGFAT---GKGEVPDL--------------VLVNPP 310

Query: 304 RSGMDIDTCKMVQGY--ERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEA 361
           R G+    C+ +     +RILY SCN +T+ ++L +L + H ++R  LFD FP+T H E 
Sbjct: 311 RRGIGKALCEYLSHMAPDRILYSSCNAQTMAQDLALLPDYH-ILRVRLFDMFPHTAHYEV 369

Query: 362 GVMLERK 368
             +L R+
Sbjct: 370 MALLVRR 376