Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 87/318 (27%), Positives = 142/318 (44%), Gaps = 55/318 (17%)

Query: 70  EKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLS 129
           E   +D  P  ++ +++L+  L   +      R  L  V+ LS  SG  +V         
Sbjct: 164 EVVNIDACPVLAKSLSELIAPLNQCLNRLSAKR-SLGHVELLSVDSGPCVVL-------- 214

Query: 130 EEWITAAQALKQRLNDEGFNL-NLIGRARKMKVVL-DRDYVVENLQVN-GQPYVYKQVEN 186
                    +   LND+   L    G   K+++VL D D  +E L  + G PY   +  +
Sbjct: 215 --------RITSPLNDKDKALLATFGEQHKVRLVLLDDDSKLETLWGDEGLPYYTLEDGS 266

Query: 187 S-------FTQPNAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLAT 238
           S       F Q N ++ ++M+  A+D  Q   G+ +L+L+CG GNF+L LA+   +V+  
Sbjct: 267 SLGFSPGNFIQVNGEINQQMVTQAIDWLQIQPGERVLDLFCGVGNFTLPLAKAGAQVVGV 326

Query: 239 ELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSY----R 294
           E     V  A+ N             MS  E  +   G        D   DL +     R
Sbjct: 327 EGVDAMVAQARVNAT-----------MSGVEGAEFYHG--------DLSADLSAAPWLGR 367

Query: 295 CNTIFVDPPRSGM--DIDTCKMVQGYERILYISCNPETLQENLQ-VLGETHQVVRFALFD 351
            + + +DP R+G    +   K ++  + I+YISCNP +L  + + +L + +Q+ R  L D
Sbjct: 368 IDKLLLDPARAGAYESLQWLKKMKP-KAIVYISCNPVSLARDCEPLLAQGYQLSRLGLID 426

Query: 352 QFPYTHHMEAGVMLERKK 369
            FP THH+EA  + E +K
Sbjct: 427 MFPQTHHIEAMALFELEK 444