Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 21/198 (10%)

Query: 173 QVNGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQE-SKGDLLELYCGNGNFSLALAQN 231
           + NG P   +    SF Q + +VA K+   A   T+E +   + +L+CG G F L  A  
Sbjct: 197 EFNGVPLYIRP--KSFFQTHPEVAAKLYLSARKWTRELAPTSIWDLFCGVGGFGLHCASK 254

Query: 232 FERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQ 291
              +   E+   ++  A+ +     +  V+   + +  F     G+              
Sbjct: 255 EVALTGIEIEAEAIACAKMSAETLGLDKVRFTALDSTSFASDSRGEE------------- 301

Query: 292 SYRCNTIFVDPPRSGMDIDTCKMVQGY--ERILYISCNPETLQENLQVLGETHQVVRFAL 349
             +   I V+PPR G+    C  +  +  + ILY SCNP+TL ++L  +   ++V +  L
Sbjct: 302 --KPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDLHCISG-YRVTKVQL 358

Query: 350 FDQFPYTHHMEAGVMLER 367
           FD FP+T H E  VML+R
Sbjct: 359 FDMFPHTDHFEVLVMLQR 376