Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  498 bits (1281), Expect = e-145
 Identities = 244/363 (67%), Positives = 301/363 (82%), Gaps = 3/363 (0%)

Query: 6   VNPELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFN 65
           ++P+ Y AQL  K  +L  +FVD+  PELEVF S  A+YRMRAEFR+WHEG+D+YY MF+
Sbjct: 6   MDPQQYDAQLDVKRQKLAQLFVDFETPELEVFASQKAHYRMRAEFRVWHEGEDLYYYMFD 65

Query: 66  QETREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYH 125
           +   +K R +QF  AS+LIND+MP LM A++ +P+LRHKLFQVDFLSTLSGEILVSLLYH
Sbjct: 66  KAQNQKIRCEQFLPASQLINDMMPELMAALRPNPVLRHKLFQVDFLSTLSGEILVSLLYH 125

Query: 126 RQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVE 185
           +QL  +W   AQALK+ L+ + F +++IGRARK K+V+DRD+V+E+L VNG+   YKQVE
Sbjct: 126 KQLDAQWQEEAQALKEALSSK-FKVDIIGRARKQKLVMDRDFVIESLPVNGKQLTYKQVE 184

Query: 186 NSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245
           NSFTQPN +VA KMLEWA+D T++S GDLLELYCGNGNFS+ALAQNF RVLATELAKPSV
Sbjct: 185 NSFTQPNGEVAIKMLEWAIDITRDSSGDLLELYCGNGNFSIALAQNFNRVLATELAKPSV 244

Query: 246 EAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305
           ++AQ+NI ANQI N+QIIRMSAE+FT A+  KR F RL+  GVDL SY CNTIFVDPPR+
Sbjct: 245 DSAQYNIEANQIDNLQIIRMSAEDFTDALAKKRSFRRLE--GVDLDSYDCNTIFVDPPRA 302

Query: 306 GMDIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVML 365
           G+D +T  MVQGYERILYISCNP TL +NL+VL +TH++ RFALFDQFPYT HME+GV+L
Sbjct: 303 GLDDNTLSMVQGYERILYISCNPNTLLDNLKVLDKTHKITRFALFDQFPYTDHMESGVLL 362

Query: 366 ERK 368
           ER+
Sbjct: 363 ERR 365