Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 24/199 (12%)

Query: 177 QPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERV 235
           QP        +F Q NA++ + M+  A+D      G+ +L+L+CG GNFSL LA+    V
Sbjct: 269 QPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLARMGADV 328

Query: 236 LATELAKPSVEAAQFNIAANQIGNVQIIR--MSAEEFTQAMEGKREFNRLKDAGVDLQSY 293
           +  E     V  A+ N  AN + N+      +SA+  ++   GK                
Sbjct: 329 IGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGK---------------- 372

Query: 294 RCNTIFVDPPRSGM--DIDTCKMVQGYERILYISCNPETLQENLQVLGET-HQVVRFALF 350
             + + +DP R+G    +   K ++   +++Y+SCNP +L  +  VL E  +++ +  L 
Sbjct: 373 -IDKLLLDPARAGAYESLQWLKKMKP-RQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430

Query: 351 DQFPYTHHMEAGVMLERKK 369
           D FP THH+EA  + E  K
Sbjct: 431 DMFPQTHHIEAMALFELAK 449