Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 19/182 (10%)

Query: 187 SFTQPNAKVAEKMLEWAVDCTQE-SKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245
           SF Q N  VA K+ + A +   E +   L +L+CG G F L  A     +   E+   ++
Sbjct: 212 SFFQTNPHVAAKLYQTAREWVGEFAPKSLWDLFCGVGGFGLHCASKDIPLTGIEIEAEAI 271

Query: 246 EAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305
             A+ +     + NVQ + + + +F +                D  + + + I V+PPR 
Sbjct: 272 ACAKMSAQMMGLDNVQFMALDSTDFAKG---------------DAAATKPDLIIVNPPRR 316

Query: 306 GMDIDTCKMVQGY--ERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGV 363
           G+    C  +  +    ILY SCNP+TL ++L V    +Q+ R  LFD FP++ H E   
Sbjct: 317 GIGESLCDALSEFAPRAILYSSCNPKTLAKDL-VHIRGYQLTRVQLFDLFPHSDHFEVLA 375

Query: 364 ML 365
           ML
Sbjct: 376 ML 377