Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA (uracil-5-)-methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  479 bits (1234), Expect = e-140
 Identities = 240/364 (65%), Positives = 290/364 (79%), Gaps = 3/364 (0%)

Query: 6   VNPELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFN 65
           ++P  Y AQL  K  +L+  F  +  P +EVF S   +YRMRAEFR+WHEGDD+YY MF+
Sbjct: 6   MDPTTYDAQLEAKRIKLEQAFAQFETPSIEVFASDPEHYRMRAEFRVWHEGDDLYYYMFD 65

Query: 66  QETREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYH 125
           +   +K R DQ+  AS LIN++M  L+  +K +P LRHKLFQVDFLSTLSGEILVSLLYH
Sbjct: 66  KALNDKVRCDQYLPASTLINEMMAALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYH 125

Query: 126 RQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVE 185
           RQL ++W   A ALK +L+ + F +N+IGRARK K+ LD+D+VVE+LQVN + + YKQ+E
Sbjct: 126 RQLDDQWRAEAIALKAKLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIE 184

Query: 186 NSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245
           NSFTQPNAKVA KMLEWA+D TQ S+GDLLELYCGNGNFS+ALAQNF RVLATELAKPSV
Sbjct: 185 NSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSV 244

Query: 246 EAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305
           +AAQ+NI  N I N+QIIRMSAEEF+ AM  KR F RL+  G+DL SY CNTIFVDPPR+
Sbjct: 245 DAAQYNIEINGIDNLQIIRMSAEEFSDAMAKKRSFRRLE--GIDLDSYLCNTIFVDPPRA 302

Query: 306 GMDIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVML 365
           G+D  T  +VQGYERILYISCNP+TL++NLQ L +TH+V RFALFDQFPYT HME GV+L
Sbjct: 303 GIDPATLDLVQGYERILYISCNPDTLKDNLQQLYKTHKVTRFALFDQFPYTDHMETGVLL 362

Query: 366 ERKK 369
           ER K
Sbjct: 363 ERIK 366