Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase from Klebsiella michiganensis M5al

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 89/365 (24%), Positives = 159/365 (43%), Gaps = 39/365 (10%)

Query: 9   ELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQET 68
           EL Q      +ARL    VD      ++  +    YR RA   + ++       +  ++ 
Sbjct: 98  ELQQQSKRAALARLMKRDVD------DIIAASPWGYRRRARLSLNYQPKTQQLQIGFRKA 151

Query: 69  REKYRVD--QFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHR 126
                VD  Q P        L+P + + + G   LR +L  V+ +   +G ++V     R
Sbjct: 152 NSSEIVDVVQCPVLVPAFGALLPAVRECLSGLQSLR-QLGHVELVQADNGPLMVL----R 206

Query: 127 QLSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRD--YVVENLQVNGQPYVYKQV 184
             +       + L++     G +L L  ++  ++ +      Y  + L++   P  + QV
Sbjct: 207 HTAALPAADKEKLERFSQSHGLSLYLAPQSEILEHIRGEAPWYTSDGLRLVFSPRDFIQV 266

Query: 185 ENSFTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPS 244
            +   Q   + A   LEW +D   + +  +L+L+CG GNF+L LA+   +V+  E     
Sbjct: 267 NDGVNQLMVRTA---LEW-LDIQPQDR--VLDLFCGMGNFTLPLAKRAAQVVGVEGVPAL 320

Query: 245 VEAAQFNIAANQIGNVQIIRMSAEE-FTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPP 303
           V  A+ N A N + NV     + EE  T+    K  F++               + +DP 
Sbjct: 321 VVKARENAALNALHNVTFFHENLEEDVTRQAWAKHGFDK---------------VLLDPA 365

Query: 304 RSGMDIDTCKMVQ-GYERILYISCNPETLQENLQVLGET-HQVVRFALFDQFPYTHHMEA 361
           R+G       +++    R++Y+SCNP TL  +  VL +  + + R A+ D FP+T H+E+
Sbjct: 366 RAGAAGVMLHIIKLAPRRVVYVSCNPATLARDSDVLLQAGYTIQRLAMLDMFPHTGHLES 425

Query: 362 GVMLE 366
            V+ E
Sbjct: 426 MVLFE 430