Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 65.5 bits (158), Expect = 3e-15
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 186 NSFTQPNAKVAEKMLEWAVDCTQESKG--DLLELYCGNGNFSLALAQNFERVLATELAKP 243
           ++F Q N +  E +L   V+      G   + +LYCG G+ +L LA++   +   E    
Sbjct: 284 DTFLQTNTRATE-LLYGEVERMAGLSGREHVWDLYCGVGSIALWLAEHAATICGMEATPA 342

Query: 244 SVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPP 303
           SVEAAQ N  A    +   +        ++    +    + D            +  DPP
Sbjct: 343 SVEAAQRNAQAAGCTHCDFVAGDVRALLRSRSKGKAQEPIPDV-----------VVTDPP 391

Query: 304 RSGM--DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEA 361
           R+GM  D+    +     RI+Y+SC+P T+  ++ +L + + +      D FP+T H+E 
Sbjct: 392 RAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGLLMQRYTLHEARPVDLFPHTPHVET 451

Query: 362 GVMLERKK 369
            V+L  K+
Sbjct: 452 VVLLSNKE 459