Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score = 77.0 bits (188), Expect = 9e-19
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 24/189 (12%)

Query: 187 SFTQPNAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSV 245
           +F Q NA++ + M+  A++      G+ +L+L+CG GNFSL LA+    V+  E     V
Sbjct: 279 NFVQVNAQINKTMVAQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMV 338

Query: 246 EAAQFNIAANQIGNVQIIR--MSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPP 303
             A+ N AAN + N+      +SA+   +   GK                  + + +DP 
Sbjct: 339 SQARENAAANGLSNLTFYHGDLSADLSCEPWMGK-----------------IDKLLLDPA 381

Query: 304 RSGM--DIDTCKMVQGYERILYISCNPETLQENLQVLGET-HQVVRFALFDQFPYTHHME 360
           R+G    +   K ++   +++Y+SCNP +L  +  VL E  +++ +  L D FP THH+E
Sbjct: 382 RAGAFESLQWLKKMKP-RQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIE 440

Query: 361 AGVMLERKK 369
           A  + E  K
Sbjct: 441 AMALFELAK 449