Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., RNA polymerase sigma factor RpoH from Pseudomonas fluorescens FW300-N2E2

 Score =  343 bits (880), Expect = 2e-99
 Identities = 176/284 (61%), Positives = 216/284 (76%), Gaps = 3/284 (1%)

Query: 1   MTNQAYPM-ALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLR 59
           MT    P  ALV   +L++Y+ +VN  P+L+ ++ERELAE L+Y+ D++AA+ ++L+HLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLEAARQMVLAHLR 60

Query: 60  FVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLR 119
           FVVH+AR YSGYGL  ADL+QEGN+GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHE++LR
Sbjct: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 120 NWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQD 179
           NWRIVK+ATTKAQRKLFFNLR  KKRL W NN EV  VA  LGVEP EVREMESRL   D
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGHD 180

Query: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239
            AF+ +AE D++  A+ +P  YLED   D A  LE  +W  ++   L  AL  LDERS+ 
Sbjct: 181 MAFDPAAEADDDS-AFQSPANYLEDHRYDPARQLEDADWSDNSNTNLHEALEVLDERSRD 239

Query: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           I+  RWL ++ K TL DLA+ Y VSAERIRQLEK+AM KLK ++
Sbjct: 240 ILYQRWLAEE-KATLHDLAQKYNVSAERIRQLEKSAMNKLKVSI 282